Lee E. Hughes

Previous Scheduled Teaching

Published Intellectual Contributions

Book Chapter

• Hughes, L.E. (2015). Course-based Undergraduate Research Experiences (CUREs).. Innovations in College Science Teaching, 2015. Society for College Science Teaching.

Journal Article

• Hanauer, D.I., Zhang, T., Graham, M.J., Adams, S.D., Ahumada-Santos, Y.P., Alvey, R.M., Antunes, M.S., Ayuk, M.A., Elena Báez-Flores, M., Bancroft, C.T., Bates, T.C., Bechman, M.J., Behr, E., Beyer, A.R., Bortz, R.L., Bowder, D.M., Briggs, L.A., Brown-Kennerly, V., Buckholt, M.A., Bullock, S.K., Butela, K.A., Byrum, C.A., Caruso, S.M., Chia, C.P., Chong, R.A., Chung, H., Clase, K.L., Coleman, S.T., Parks Collins, D., Conant, S.B., Condon, B.M., Connerly, P.L., Connors, B.J., Cook-Easterwood, J.E., Crump, K.E., D’Elia, T., Dennis, M.K., DeVeaux, L.C., Diacovich, L., Duffy, I., Edgington, N.P., Edwards, D.C., Egwuatu, T.O., Eivazova, E.R., Fallest-Strobl, P.C., Fillman, C.L., Findley, A.M., Fisher, E., Fisher, M.R., Fogarty, M.P., Freise, A.C., Frost, V.J., Gainey, M.D., Garcia Costas, A.M., Garza, A.A., Gavin, H.E., Ghittoni, R., Gibb, B., Golebiewska, U.P., Grinath, A.S., Gurney, S.M., Hare, R.F., Heninger, S.G., Hinz, J.M., Hughes, L.E., Jayachandran, P., Johnson, K.C., Johnson, A.A., Kanther, M., Kenna, M., Kirkpatrick, B.L., Klyczek, K.K., Kohl, K.P., Kuchka, M., LaPeruta, A.J., Lee-Soety, J.Y., Lewis, L.O., Lindberg, H.M., Madden, J.A., Markov, S.A., Mastropaolo, M.D., Mathur, V., McClory, S.P., Merkhofer, E.C., Merkle, J.A., Michael, S.F., Mitchell, J.C., Molloy, S.D., Monti, D.L., Mussi, M.A., Nance, H., Nieto-Fernandez, F.E., Nissen, J.C., Nsa, I.Y., O’Donnell, M.G., Page, S.T., Panagakis, A., Parra-Unda, J.R., Pelletier, T.A., Perez Morales, T.G., Peters, N.T., Phuntumart, V., Pollenz, R.S., Preuss, M.L., Puthoff, D.P., Raifu, M.K., Reyna, N.S., Rinehart, C.A., Rocheleau, J.M., Rossier, O., Rudner, A.D., Rueschhoff, E.E., Ryan, A., Saha, S., Shaffer, C.D., Smith, M.A., Sprenkle, A.B., Strong, C.L., Sunnen, C.N., Tarbox, B.P., Temple, L., Thoemke, K.R., Thomas, M.A., Tobiason, D.M., Tolsma, S.S., Garcia, J.T., Valentine, M.S., Vazquez, E., Ward, R.E., Ward, C.M., Ware, V.C., Warner, M.H., Washington, J.M., Westholm, D.E., Wheaton, K.A., Wilkes, B.M., Williams, E.C., Biederman, W.H., Cresawn, S.G., Heller, D.M., Jacobs-Sera, D., Hatfull, G.F., Asai, D.J., Sivanathan, V. (2023). Models of classroom assessment for course-based research experiences. Other. 8 https://www.frontiersin.org/articles/10.3389/feduc.2023.1279921
• Nath, S., Sulaiman, A., Maneekul, J., Bhuiyan, S., Layton, S.R., Menchaca, C., Nayek, S., Acosta, J., Coronado, A., Drake, A., Eastland, I., Gallegos, M., Gutierrez-Langa, M., Jefferson, N., Johnson, K., Klokker, E., Muniz, M., Hernandez Olmos, D., Pascarella, G., Richardson, T., Setliff, T., Stiles, A.N., Sun, E., Tokel, M., Vondra, J.M., Hughes, L.E. (2022). Complete Genome Sequences of the Novel Cluster BP Phages Infecting Streptomyces sanglieri, AxeJC, Cumberbatch, Eastland, Eklok, HFrancette, Ignacio, Piccadilly, and Vondra.. Other. 11 (10) e0075122. https://journals.asm.org/doi/10.1128/mra.00751-22
• Hanauer, D.I., Graham, M.J., Arnold, R.J., Ayuk, M.A., Balish, M.F., Beyer, A.R., Butela, K.A., Byrum, C.A., Chia, C.P., Chung, H.M., Clase, K.L., Conant, S., Coomans, R.J., D'Elia, T., Diaz, J., Diaz, A., Doty, J.A., Edgington, N.P., Edwards, D.C., Eivazova, E., Emmons, C.B., Fast, K.M., Fisher, E.J., Fleischacker, C.L., Frederick, G.D., Freise, A.C., Gainey, M.D., Gissendanner, C.R., Golebiewska, U.P., Guild, N.A., Hendrickson, H.L., Herren, C.D., Hopson-Fernandes, M.S., Hughes, L.E., Jacobs-Sera, D., Johnson, A.A., Kirkpatrick, B.L., Klyczek, K.K., Koga, A.P., Kotturi, H., LeBlanc-Straceski, J., Lee-Soety, J.Y., Leonard, J.E., Mastropaolo, M.D., Merkhofer, E.C., Michael, S.F., Mitchell, J.C., Mohan, S., Monti, D.L., Noutsos, C., Nsa, I.Y., Peters, N.T., Plymale, R., Pollenz, R.S., Porter, M.L., Rinehart, C.A., Rosas-Acosta, G., Ross, J.F., Rubin, M.R., Scherer, A.E., Schroeder, S.C., Shaffer, C.D., Sprenkle, A.B., Sunnen, C.N., Swerdlow, S.J., Tobiason, D., Tolsma, S.S., Tsourkas, P.K., Ward, R.E., Ware, V.C., Warner, M.H., Washington, J.M., Westover, K.M., White, S.J., Whitefleet-Smith, J.L., Williams, D.C., Wolyniak, M.J., Zeilstra-Ryalls, J.H., Asai, D.J., Hatfull, G.F., Sivanathan, V. (2022). Instructional Models for Course-Based Research Experience (CRE) Teaching.. Other. 21 (1) ar8. https://doi.org/10.1187/cbe.21-03-0057
• Ramsey, J., McIntosh, B., Renfro, D., Aleksander, S.A., LaBonte, S., Ross, C., Zweifel, A.E., Liles, N., Farrar, S., Gill, J.J., Erill, I., Ades, S., Berardini, T.Z., Bennett, J.A., Brady, S., Britton, R., Carbon, S., Caruso, S.M., Clements, D., Dalia, R., Defelice, M., Doyle, E.L., Friedberg, I., Gurney SMR, Hughes, L.E., Johnson, A., Kowalski, J.M., Li , D., Lovering, R.C., Mans, T.L., McCarthy, F., Moore, S.D., Murphy, R., Paustian, T.D., Perdue, S., Peterson, C.N., Prüß, B.M., Saha, M.S., Sheehy, R.R., Tansey, J.T., Temple, L., Thorman, A.W., Trevino, S., Vollmer, A.C., Walbot, V., Willey, J., Siegele, D.A., Hu, J.C. (2021). Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).. PLOS Computational Biology. 17 (10) e1009463. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009463
• Jacobs-Sera, D., Abad, L.A., Alvey, R.M., Anders, K.R., Aull, H.G., Bhalla, S.S., Blumer, L.S., Bollivar, D.W., Bonilla, J.A., Butela, K.A., Coomans, R.J., Cresawn, S.G., D'Elia, T., Diaz, A., Divens, A.M., Edgington, N.P., Frederick, G.D., Gainey, M.D., Garlena, R.A., Grant, K.W., Gurney SMR, Hendrickson, H.L., Hughes, L.E., Kenna, M.A., Klyczek, K.K., Kotturi, H., Mavrich, T.N., McKinney, A.L., Merkhofer, E.C., Moberg Parker, J., Molloy, S.D., Monti, D.L., Pape-Zambito, D.A., Pollenz, R.S., Pope, W.H., Reyna, N.S., Rinehart, C.A., Russell, D.A., Shaffer, C.D., Sivanathan, V., Stoner, T.H., Stukey, J., Sunnen, C.N., Tolsma, S.S., Tsourkas, P.K., Wallen, J.R., Ware, V.C., Warner, M.H., Washington, J.M., Westover, K.M., Whitefleet-Smith, J.L., Wiersma-Koch, H.I., Williams, D.C., Zack, K.M., Hatfull, G.F. (2020). Genomic diversity of bacteriophages infecting Microbacterium spp.. PLOS One. 15 (6) e0234636. https://dx.plos.org/10.1371/journal.pone.0234636
• Premraj, D., Thompson, R., Hughes, L.E., Adams, J. (2019). Key Factors Influencing Retention Rates Among Historically Under-represented Student Groups in STEM Fields. Journal of College Student Retention. 28. Sage. https://journals.sagepub.com/home/csr
• Klyczek, K.K., Jacobs-Sera, D., Adair, T.L., Adams, S.D., Ball, S.L., Benjamin, R.C., Bonilla, J.A., Breitenberger, C.A., Daniels, C.J., Gaffney, B.L., Harrison, M., Hughes, L.E., King, R.A., Krukonis, G.P., Lopez, A.J., Monsen-Collar, K., Pizzorno, M.C., Rinehart, C.A., Program, S., Program, P., Staples, A.K., Stowe, E.L., Garlena, R.A., Russell, D.A., Cresawn, S.G., Pope, W.H., Hatfull, G.F. (2018). Complete Genome Sequences of 44 Arthrobacter Phages. Genome Announcements. 6 (5) e01474--17. http://genomea.asm.org/content/6/5/e01474-17
• Hughes, L.E., Shaffer, C.D., Ware, V.C., Aguayo, I., Aziz, R.M., Bhuiyan, S., Bindert, I.S., Calovich-Benne, C.K., Chapman, J., Donegan-Quick, R., Farooq, A., Garcia, C., Graham, L.H., Green, B.Y., Kenna, M.A., Kneeream, E.R., Laing, C.E., Mageeney, C.M., Meridew, S.N., Mikolon, A.R., Morgan, R.E., Nayek, S., Olugbade, I.D., Pike, K.C., Schlegel, L.E., Shishido, T.C., Suresh, T., Suri, N., Hafer, K.W., Garlena, R.A., Russell, D.A., Cresawn, S.G., Pope, W.H., Jacobs-Sera, D., Hatfull, G.F. (2018). Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species. Genome Announcements. 6 (2) e01146--17. http://genomea.asm.org/content/6/2/e01146-17
• Hanauer, D.I., Graham, M.J., Sea-Phages, Betancur, L., Bobrownicki, A., Cresawn, S.G., Garlena, R.A., Jacobs-Sera, D., Kaufmann, N., Pope, W.H., Russell, D.A., Jacobs, W.R., Sivanathan, V., Asai, D.J., Hatfull, G.F., Actis, L., Adair, T., Adams, S., Alvey, R., Anders, K., Anderson, W.A., Antoniacci, L., Ayuk, M., Baliraine, F., Balish, M., Ball, S., Barbazuk, B., Barekzi, N., Barrera, A., Berkes, C., Best, A., Bhalla, S., Blumer, L., Bollivar, D., Bonilla, J.A., Borges, K., Bortz, B., Breakwell, D., Breitenberger, C., Breton, T., Brey, C., Bricker, J.S., Briggs, L., Broderick, E., Brooks, T.D., Brown-Kennerly, V., Buckholt, M., Butela, K., Byrum, C., Cain, D., Carson, S., Caruso, S., Caslake, L., Chia, C., Chung, H., Clase, K., Clement, B., Conant, S., Connors, B., Coomans, R., D’Angelo, W., D’Elia, T., Daniels, C.J., Daniels, L., Davis, B., DeCourcy, K., DeJong, R., Delaney-Nguyen, K., Delesalle, V., Diaz, A., Dickson, L., Doty, J., Doyle, E., Dunbar, D., Easterwood, J., Eckardt, M., Edgington, N., Elgin, S., Erb, M., Erill, I., Fast, K., Fillman, C., Findley, A., Fisher, E., Fleischacker, C., Fogarty, M., Frederick, G., Frost, V., Furbee, E., Gainey, M., Gallegos, I., Gissendanner, C., Golebiewska, U., Grose, J., Grubb, S., Guild, N., Gurney, S., Hartzog, G., Hatherill, J.R., Hauser, C., Hendrickson, H., Herren, C., Hinz, J., Ho, E., Hope, S., Hughes, L.E., Hull, A., Hutchison, K., Isern, S., Janssen, G., Jarvik, J., Johnson, A., Jones, N., Kagey, J., Kart, M., Katsanos, J., Keener, T., Kenna, M., King, R., King-Smith, C., Kirkpatrick, B., Klyczek, K., Koch, H., Koga, A., Korey, C., Krukonis, G., Kurt, B., Leadon, S., LeBlanc-Straceski, J., Lee, J., Lee-Soety, J., Lewis, L., Limeri, L., Little, J., Llano, M., Lopez, J., MacLaren, C., Makemson, J., Martin, S., Mavrodi, D., McGuier, N., McKinney, A., McLean, J., Merkhofer, E., Michael, S., Miller, E., Mohan, S., Molloy, S., Monsen-Collar, K., Monti, D., Moyer, A., Neitzel, J., Nelson, P., Newman, R., Noordewier, B., Olapade, O., Ospina-Giraldo, M., Page, S., Paige-Anderson, C., Pape-Zambito, D., Park, P., Parker, J., Pedulla, M., Peister, A., Pfaffle, P., Pirino, G., Pizzorno, M., Plymale, R., Pogliano, J., Pogliano, K., Powell, A., Poxleitner, M., Preuss, M., Reyna, N., Rickus, J., Rinehart, C., Robinson, C., Rodriguez-Lanetty, M., Rosas-Acosta, G., Ross, J., Rowland, N., Royer, D., Rubin, M., Sadana, R., Saha, M., Saha, S., Sandel, M., Sasek, T., Saunders, L., Saville, K., Scherer, A., Schildbach, J., Schroeder, S., Schwebach, J.R., Seegulam, M., Segura-Totten, M., Shaffer, C., Shanks, R., Sipprell, A., Slowan-Pomeroy, T., Smith, K., Smith, M.A., Smith-Caldas, M., Stamm, J., Stockwell, S., Stowe, E., Stukey, J., Sunnen, C.N., Tarbox, B., Taylor, S., Temple, L., Timmerman, M., Tobiason, D., Tolsma, S., Torres, M., Twichell, C., Valle-Rivera, A.M., Vazquez, E., Villagomez, J., Voshell, S., Wallen, J., Ward, R., Ware, V., Warner, M., Washington, J., Weir, S., Wertz, J., Westholm, D., Weston-Hafer, K., Westover, K., Whitefleet-Smith, J., Wiedemeier, A., Wolyniak, M., Yan, W., Zegers, G.P., Zhang, D., Zimmerman, A. (2017). An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning. Proceedings of the National Academy of Sciences. 201718188. http://www.pnas.org/content/early/2017/12/05/1718188115
• Briggs, A.G., Hughes, L.E., Brennan, R.E., Buchner, J., Horak, R.E., Amburn, D.S., McDonald, A.H., Primm, T.P., Smith, A.C., Stevens, A.M., Yung, S.B., Paustian, T.D. (2017). Concept Inventory Development Reveals Common Student Misconceptions about Microbiology †. Journal of Microbiology & Biology Education. 18 (3) http://www.asmscience.org/content/journal/jmbe/10.1128/jmbe.v18i3.1319
• Paustian, T.D., Briggs, A.G., Brennan, R.E., Boury, N., Buchner, J., Harris, S., Horak, R.E., Hughes, L.E., Katz-Amburn, D.S., Massimelli, M.J., McDonald, A.H., Primm, T.P., Smith, A.C., Stevens, A.M., Yung, S.B. (2017). Development, Validation, and Application of the Microbiology Concept Inventory †. Journal of Microbiology & Biology Education. 18 (3) http://www.asmscience.org/content/journal/jmbe/10.1128/jmbe.v18i3.1320
• Fleischacker, C.L., Segura-Totten, M., Workshop, S.2., Garlena, R.A., Jacobs-Sera, D., Pope, W.H., Russell, D.A., Hatfull, G.F., Workshop, S.2., Asai, D., Bhalla, S., Biederman, B., Bortz, R., Breton, T., Brey, C., Brown-Kennerly, V., Butela, K., Cavinder, B., Connors, B., Cresawn, S., Decker, J., Nguyen, K.D., Diaz, A., Dojs, M., Doty, J., Edwards, D., Fast, K., Fleischacker, C., Frost, V., Furlong, L., Haddad, E., Hatfull, G., Hughes, L.E., Jacobs-Sera, D., Katsanos, J., Kesinger, E., Kirkpatrick, B., Kobi, P., Koga, A., Lawson, J., Martin, S., McLean, J., Merkhofer, E., Montgomery, J., Moriyama, E., Gibson, M.N., Ospina-Giraldo, M., Paige-Anderson, C., Pope, W., Powell, A., Preuss, M., Ruffin, V., Russell, D., Sandel, M., Scherer, A., Schwebach, J., Scrudato, M., Seegulam, M.E., Segura-Totten, M., Sivanathan, V., Smith, M.A., Stamm, J., Sutter, N., Tolsma, S., Twichell, C., Valle-Rivera, A.M., Washington, T., Weir, S., Westover, K., Yan, W. (2017). Genome Sequence of Mycobacterium Phage CrystalP. Genome Announcements. 5 (28) e00542–17. http://genomea.asm.org/content/5/28/e00542-17
• Klyczek, K.K., Bonilla, J.A., Jacobs-Sera, D., Adair, T.L., Afram, P., Allen, K.G., Archambault, M.L., Aziz, R.M., Bagnasco, F.G., Ball, S.L., Barrett, N.A., Benjamin, R.C., Blasi, C.J., Borst, K., Braun, M.A., Broomell, H., Brown, C.B., Brynell, Z.S., Bue, A.B., Burke, S.O., Casazza, W., Cautela, J.A., Chen, K., Chimalakonda, N.S., Chudoff, D., Connor, J.A., Cross, T.S., Curtis, K.N., Dahlke, J.A., Deaton, B.M., Degroote, S.J., DeNigris, D.M., DeRuff, K.C., Dolan, M., Dunbar, D., Egan, M.S., Evans, D.R., Fahnestock, A.K., Farooq, A., Finn, G., Fratus, C.R., Gaffney, B.L., Garlena, R.A., Garrigan, K.E., Gibbon, B.C., Goedde, M.A., Guerrero Bustamante, C.A., Harrison, M., Hartwell, M.C., Heckman, E.L., Huang, J., Hughes, L.E., Hyduchak, K.M., Jacob, A.E., Kaku, M., Karstens, A.W., Kenna, M.A., Khetarpal, S., King, R.A., Kobokovich, A.L., Kolev, H., Konde, S.A., Kriese, E., Lamey, M.E., Lantz, C.N., Lapin, J.S., Lawson, T.O., Lee, I.Y., Lee, S.M., Lee-Soety, J.Y., Lehmann, E.M., London, S.C., Lopez, A.J., Lynch, K.C., Mageeney, C.M., Martynyuk, T., Mathew, K.J., Mavrich, T.N., McDaniel, C.M., McDonald, H., McManus, C.J., Medrano, J.E., Mele, F.E., Menninger, J.E., Miller, S.N., Minick, J.E., Nabua, C.T., Napoli, C.K., Nkangabwa, M., Oates, E.A., Ott, C.T., Pellerino, S.K., Pinamont, W.J., Pirnie, R.T., Pizzorno, M.C., Plautz, E.J., Pope, W.H., Pruett, K.M., Rickstrew, G., Rimple, P.A., Rinehart, C.A., Robinson, K.M., Rose, V.A., Russell, D.A., Schick, A.M., Schlossman, J., Schneider, V.M., Sells, C.A., Sieker, J.W., Silva, M.P., Silvi, M.M., Simon, S.E., Staples, A.K., Steed, I.L., Stowe, E.L., Stueven, N.A., Swartz, P.T., Sweet, E.A., Sweetman, A.T., Tender, C., Terry, K., Thomas, C., Thomas, D.S., Thompson, A.R., Vanderveen, L., Varma, R., Vaught, H.L., Vo, Q.D., Vonberg, Z.T., Ware, V.C., Warrad, Y.M., Wathen, K.E., Weinstein, J.L., Wyper, J.F., Yankauskas, J.R., Zhang, C., Hatfull, G.F. (2017). Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.. PLOS One. 12 (7) e0180517.
• Donegan-Quick, R., Gibbs, Z.A., Amaku, P.O., Bernal, J.T., Boyd DAM, Burr, A.R., Coelho, R.E., Dossou, A.S., Henry, R.M., Huynh, M., Kanani-Hendijani, T.A., Martinez, G., McClendon-Moss, T.O., Orozco, S., San Martin, J.M., Stoddart, K.E., Stringer, M.M., Villegas, R.L., Nayek, S., Suri, N., Garlena, R.A., Russell, D.A., Hughes, L.E. (2017). Genome Sequences of Five Streptomyces Bacteriophages Forming Cluster BG.. Genome Announcements. 5 (28)
• Dedrick, R.M., Jacobs-Sera, D., Bustamante, C.A., Garlena, R.A., Mavrich, T.N., Pope, W.H., Reyes, J.C., Russell, D.A., Adair, T., Alvey, R., Bonilla, J.A., Bricker, J.S., Brown, B.R., Byrnes, D., Cresawn, S.G., Davis, W.B., Dickson, L.A., Edgington, N.P., Findley, A.M., Golebiewska, U., Grose, J.H., Hayes, C.F., Hughes, L.E., Hutchison, K.W., Isern, S., Johnson, A.A., Kenna, M.A., Klyczek, K.K., Mageeney, C.M., Michael, S.F., Molloy, S.D., Montgomery, M.T., Neitzel, J., Page, S.T., Pizzorno, M.C., Poxleitner, M.K., Rinehart, C.A., Robinson, C.J., Rubin, M.R., Teyim, J.N., Vazquez, E., Ware, V.C., Washington, J., Hatfull, G.F. (2017). Prophage-mediated defence against viral attack and viral counter-defence. Nature Microbiology. 2 16251. http://www.nature.com/articles/nmicrobiol2016251
• Layton, S.R., Hemenway, R.M., Munyoki, C.M., Barnes, E.B., Barnett, S.E., Bond, A.M., Narvaez, J.M., Sirisakd, C.D., Smith, B.R., Swain, J., Syed, O., Bowman, C.A., Russell, D.A., Bhuiyan, S., Donegan-Quick, R., Benjamin, R.C., Hughes, L.E. (2016). Genome Sequences of Streptomyces Phages Amela and Verse. Genome Announcements. 4 (1) e01589–15. http://genomea.asm.org/content/4/1/e01589-15
• Niazy, A., Hughes, L.E. (2015). Accumulation of Pyrimidine Intermediate Orotate Decreases Virulence Factor Production in Pseudomonas aeruginosa. Current Microbiology. 1–6. http://link.springer.com/article/10.1007/s00284-015-0826-6
• Pope, W.H., Bowman, C.A., Russell, D.A., Jacobs-Sera, D., Asai, D.J., Cresawn, S.G., Jacobs, W.R., Hendrix, R.W., Lawrence, J.G., Hatfull, G.F., Science, Science Education Alliance Phage Hunters Advancing Genomics, Evolutionary, Education, Phage Hunters Integrating Research, Course, M.G. (2015). Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. Other. 4 e06416. http://elifesciences.org/content/4/e06416
• Cresawn, S.G., Pope, W.H., Jacobs-Sera, D., Bowman, C.A., Russell, D.A., Dedrick, R.M., Adair, T., Anders, K.R., Ball, S., Bollivar, D., Breitenberger, C., Burnett, S.H., Butela, K., Byrnes, D., Carzo, S., Cornely, K.A., Cross, T., Daniels, R.L., Dunbar, D., Findley, A.M., Gissendanner, C.R., Golebiewska, U.P., Hartzog, G.A., Hatherill, J.R., Hughes, L.E., Jalloh, C.S., De Los Santos, C., Ekanem, K., Khambule, S.L., King, R.A., King-Smith, C., Klyczek, K., Krukonis, G.P., Laing, C., Lapin, J.S., Lopez, A.J., Mkhwanazi, S.M., Molloy, S.D., Moran, D., Munsamy, V., Pacey, E., Plymale, R., Poxleitner, M., Reyna, N., Schildbach, J.F., Stukey, J., Taylor, S.E., Ware, V.C., Wellmann, A.L., Westholm, D., Wodarski, D., Zajko, M., Zikalala, T.S., Hendrix, R.W., Hatfull, G.F. (2015). Comparative Genomics of Cluster O Mycobacteriophages. PLOS One. 10 (3) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4351075/
• Pope, W.H., Anders, K.R., Baird, M., Bowman, C.A., Boyle, M.M., Broussard, G.W., Chow, T., Clase, K.L., Cooper, S., Cornely, K.A., DeJong, R.J., Delesalle, V.A., Deng, L., Dunbar, D., Edgington, N.P., Ferreira, C.M., Hafer, K.W., Hartzog, G.A., Hatherill, J.R., Hughes, L.E., Ipapo, K., Krukonis, G.P., Meier, C.G., Monti, D.L., Olm, M.R., Page, S.T., Peebles, C.L., Rinehart, C.A., Rubin, M.R., Russell, D.A., Sanders, E.R., Schoer, M., Shaffer, C.D., Wherley, J., Vazquez, E., Yuan, H., Zhang, D., Cresawn, S.G., Jacobs-Sera, D., Hendrix, R.W., Hatfull, G.F. (2014). Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Repertoires of tRNA Isotypes. Journal of Virology. 88 (5) 2461–2480. http://jvi.asm.org/content/88/5/2461
• Jordan, T.C., Burnett, S.H., Carson, S., Caruso, S.M., Clase, K., DeJong, R.J., Dennehy, J.J., Denver, D.R., Dunbar, D., Elgin, S.C., Findley, A.M., Gissendanner, C.R., Golebiewska, U.P., Guild, N., Hartzog, G.A., Grillo, W.H., Hollowell, G.P., Hughes, L.E., Johnson, A., King, R.A., Lewis, L.O., Li, W., Rosenzweig, F., Rubin, M.R., Saha, M.S., Sandoz, J., Shaffer, C.D., Taylor, B., Temple, L., Vazquez, E., Ware, V.C., Barker, L.P., Bradley, K.W., Jacobs-Sera, D., Pope, W.H., Russell, D.A., Cresawn, S.G., Lopatto, D., Bailey, C.P., Hatfull, G.F. (2014). A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students. mBio. 5 (1) e01051–13. http://mbio.asm.org/content/5/1/e01051-13
• Jensen, J.L., Dario-Becker, J., Hughes, L.E., Katz Amburn, D.S., Shaw, J.A. (2012). A Call for a Community of Practice to Assess the Impact of Emerging Technologies on Undergraduate Biology Education. Journal of Microbiology & Biology Education. 13 (1) http://jmbe.asm.org/index.php/jmbe/article/view/347/pdf
• Hughes, L.E. (2008). Construction and Evaluation of an Online Microbiology Course for Non-science Majors..
• Hughes, L.E. (2006). Improvement of Classroom Teaching through Online Course Development..
• Beck, D.A., and G.A. O'Donovan. (2005). Pathways of pyrimidine salvage in Streptomyces..
• Hooshdaran, M.Z., and G.A. O'Donovan. (1999). Streptomyces aspartate trans-carbamoylase is a dodecamer with dihydroorotase activity..

Popular Press Article

• Hughes, L.E. (2008). Nucleotide Building Activity. Online learning object published in the ASM MicrobeLibrary (www.microbelibrary.org)..
• Hughes, L.E. (2008). Polymerase Chain Reaction. Online learning object published in the ASM MicrobeLibrary (www.microlibrary.org)..
• Beck, D.E. and G.A. O'Donovan. (1998). Microorganisms: A Laboratory Manual ..

QUBES Educational Resources

• Arturo Diaz, Julia Lee-Soety, Shima Chaudhary, Denise Monti, Viknesh Sivanathan, Richard Pollenz, Alison Kanak, Amy B Sprenkle, Andrea R. Beyer, Bridgette Kirkpatrick, Carole Twichell, Christine A. Byrum, Deborah Tobiason, Dustin Edwards, Elizabeth Godin, Emily Savage, Heather Lindberg, Holly Nance, Jessica Rocheleau, Julie Torruellas Garcia, Kathryn E Dye, Kristen Butela, Lisa Bono, Matthew David Mastropaolo, Megan Dennis, Naomi Rowland, Quinn Vega, Regina V Alvarez, Rocky Ng, Ruth Plymale, Sergei A Markov, Steven M Caruso, Tara Turley Stoulig, Tiara Perez, Vassie Ware, Veronique Delesalle, Adam D Rudner, Beth Wilkes, Christa Bancroft, Christine Fleischacker, Eric Michael Engstrom, Frederick N Baliraine, Hari Kotturi, Jacqueline Washington, James Shanks, Hughes, L.E., Matthew Fisher, Pamela Lucas Connerly, Patricia Waikel, Sarah Reardon, Sean Coleman, Shallee Page, Swati Agrawal, Tamarah Adair, Thomas Ndolo, Alexandra Jerby, Amanda Freise, Amaya Maria Garcia Costas, Christy Fillman, Dane Bowder, Daniel Eric Westholm, Daniel Williams, Ellen Wisner, Jennifer Guerrero, Joseph Stukey, Karen Klyczek, Kari Clase, Maria Gainey, Mary Asi-Tim Ayuk, Mauricio Antunes, Rebecca Bortz, Steven Cresawn, Suparna Bhalla, Victoria Jane Frost, C. Nicole Sunnen, Mitchell Balish, Brett Pickett, Claire Rinehart, Luis Actis, Megan Valentine, Alyssa Gleichsner, Melissa Harrison, Jennifer Broderick, Sally Molloy, Gerry Zegers, Jared Stees, Kara Thoemke, Rodney King, Liz Williams, Jon Mitchell, John Rombold, Kissaou Tchedre, Edwin Vazquez, Sharon Gusky, Elvira Eivazova, Dominique Dotson, Alejandra Mussi, Jacob Kagey, Randy DeJong, Catherine Ward, Rebekah Hare, Kathryn Kohl, Imade Nsa, Tejas Bouklas, Sarah Tolsma, Charlotte Berkes, Melody Neely, Aimee Danley. (2023). Writing Microbiology Resource Announcements (MRA). https://qubeshub.org/publications/2038/5
• Butela, K., Chung, H., Hughes, L.E., Monti, D.L. (2020). Student and Faculty Tools for Generating High-Quality Phage Annotations. https://qubeshub.org/publications/2048/1
• Wisner, E., Bortz, B., Anders, K., Davis, W., Hughes, L.E. (2020). Understanding Gene Prediction Programs. https://qubeshub.org/publications/2029/1

Shared Database Upload

• Hughes, L. (2023). Streptomyces phage Dexers, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2569351137
• Hughes, L. (2023). Streptomyces phage Kenrey, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2569350005
• Hughes, L. (2023). Streptomyces phage Marav, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OQ995441.1
• Hughes, L. (2023). Streptomyces phage Provolone, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OQ995429.1
• Hughes, L. (2023). Streptomyces phage SheRa, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OQ995437.1
• Hughes, L. (2023). Streptomyces phage Bogota, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OQ938579.1
• Hughes, L. (2022). Streptomyces phage Sham, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/ON645339.1
• Hughes, L. (2022). Streptomyces phage HFrancette, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2273197276
• Hughes, L. (2022). Streptomyces phage Marky, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/ON456348.1
• Hughes, L. (2022). Streptomyces phage Stigma, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/ON456343.1
• Hughes, L. (2022). Streptomyces phage Stuff, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/ON456338.1
• Hughes, L. (2022). Streptomyces phage Asis, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/ON526979.1
• Hughes, L. (2022). Streptomyces phage BroPlease, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2255170282
• Hughes, L. (2022). Streptomyces phage Ejemplo, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2255171722
• Hughes, L. (2022). Streptomyces phage GreenWeasel, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2255170619
• Hughes, L. (2022). Streptomyces phage VieEnRose, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2255171546
• Hughes, L. (2022). Streptomyces phage AxeJC, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2243529626
• Hughes, L. (2022). Streptomyces phage Eastland, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/ON392165.1
• Hughes, L. (2022). Streptomyces phage Tomas, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OL829978.1
• Hughes, L. (2022). Streptomyces phage Piccadilly, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OL455886.1
• Hughes, L. (2022). Streptomyces phage SunsetPointe, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2183429628
• Hughes, L. (2022). Streptomyces phage Treat, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/OL455897.1
• Hughes, L. (2022). Streptomyces phage Unstoppable, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/2183429833
• Hughes, L. (2021). Streptomyces phage Battuta, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/1977374833
• Hughes, L. (2021). Streptomyces phage Cross, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MW507136.1
• Hughes, L. (2020). Streptomyces phage Maya, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT684589
• Hughes, L. (2020). Streptomyces phage Muntaha, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT024872
• Hughes, L. (2020). Streptomyces phage TieDye, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT684600
• Hughes, L. (2020). Streptomyces phage Wakanda, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT024865
• Hughes, L. (2020). Streptomyces phage Eklok, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT521991
• Hughes, L. (2020). Streptomyces phage Cumberbatch, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT451982
• Hughes, L. (2020). Streptomyces phage Ignacio, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT451980
• Hughes, L. (2020). Streptomyces phage Vondra, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT451981
• Hughes, L. (2020). Mycobacterium phage Ein37, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MT114159
• Hughes, L. (2019). Streptomyces phage FidgetOrca, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN586056
• Hughes, L. (2019). Streptomyces phage FrodoSwaggins, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN586054
• Hughes, L. (2019). Streptomyces phage Bordeaux, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN369757
• Hughes, L. (2019). Streptomyces phage Limpid, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN369754
• Hughes, L. (2019). Streptomyces phage TomSawyer, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN369750
• Hughes, L. (2019). Streptomyces phage Tribute, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN369743
• Hughes, L. (2019). Streptomyces phage Animus, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN234192
• Hughes, L. (2019). Streptomyces phage Araceli, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN224564
• Hughes, L. (2019). Streptomyces phage Intolerant, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN224565
• Hughes, L. (2019). Streptomyces phage CherryBlossom, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN204495
• Hughes, L. (2019). Streptomyces phage GirlPower, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN204492
• Hughes, L. (2019). Streptomyces phage Hoshi, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN204500
• Hughes, L. (2019). Streptomyces phage Jaylociraptor, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN204494
• Hughes, L. (2019). Streptomyces phage Meibysrarus, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN204497
• Hughes, L. (2019). Streptomyces phage Soshi, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN204504
• Hughes, L.E. (2019). Streptomyces phage Celia, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN062705
• Hughes, L.E. (2019). Streptomyces phage Leviticus, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN096375
• Hughes, L.E. (2019). Streptomyces phage Rusticus, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN096381
• Hughes, L.E. (2019). Streptomyces phage TuanPN, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN096373
• Hughes, L.E. (2019). Streptomyces phage Yasdnil, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MN096379
• Hughes, L.E. (2019). Streptomyces phage EGole, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK494112
• Hughes, L.E. (2019). Streptomyces phage Asten, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433276
• Hughes, L.E. (2019). Streptomyces phage Austintatious, complete genome.. https://www.ncbi.nlm.nih.gov/nuccore/MK305888
• Hughes, L.E. (2019). Streptomyces phage Bovely, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433270
• Hughes, L.E. (2019). Streptomyces phage Bowden, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK392363
• Hughes, L.E. (2019). Streptomyces phage Euratis, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK450426
• Hughes, L.E. (2019). Streptomyces phage Gibson, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK305891
• Hughes, L.E. (2019). Streptomyces phage IceWarrior, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433259
• Hughes, L.E. (2019). Streptomyces phage Indigo, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433271
• Hughes, L.E. (2019). Streptomyces phage Janus, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK392366
• Hughes, L.E. (2019). Streptomyces phage Lilbooboo, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK450431
• Hughes, L.E. (2019). Streptomyces phage Madamato, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433269
• Hughes, L.E. (2019). Streptomyces phage Namo, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433260
• Hughes, L.E. (2019). Streptomyces phage Nerdos, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433278
• Hughes, L.E. (2019). Streptomyces phage Nishikigoi, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK392364
• Hughes, L.E. (2019). Streptomyces phage Popy, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK433268
• Hughes, L.E. (2019). Streptomyces phage Sebastisaurus, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK450433
• Hughes, L.E. (2019). Streptomyces phage Teutsch, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK460248
• Hughes, L.E. (2019). Streptomyces phage TinaBelcher, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK392365
• Hughes, L.E. (2019). Streptomyces phage Vash, complete genome. https://www.ncbi.nlm.nih.gov/nuccore/MK450421
• Hughes, L.E. (2018). Streptomyces phage Olicious, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MK112550.1
• Hughes, L.E. (2018). Streptomyces phage Comrade, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH651172.1
• Hughes, L.E. (2018). Streptomyces phage LibertyBell, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH669006.1
• Hughes, L.E. (2018). Streptomyces phage Thestral, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH651190.1
• Hughes, L.E. (2018). Streptomyces phage Annadreamy, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH536811.1
• Hughes, L.E. (2018). Streptomyces phage Blueeyedbeauty, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH536814.1
• Hughes, L.E. (2018). Streptomyces phage Crosby, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH536815.1
• Hughes, L.E. (2018). Streptomyces phage Haizum, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH590601.1
• Hughes, L.E. (2018). Streptomyces phage Karimac, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH590599.1
• Hughes, L.E. (2018). Streptomyces phage LukeCage, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH590597.1
• Hughes, L.E. (2018). Streptomyces phage SparkleGoddess, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH590589.1
• Hughes, L.E. (2018). Streptomyces phage Starbow, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH576964.1
• Hughes, L.E. (2018). Streptomyces phage StarPlatinum, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH576965.1
• Hughes, L.E. (2018). Streptomyces phage Wofford, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH576968.1
• Hughes, L.E. (2018). Streptomyces phage Henoccus, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH229862.1
• Hughes, L.E. (2018). Streptomyces phage JackieB, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH229863.1
• Hughes, L.E. (2018). Streptomyces phage LazerLemon, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH229865.1
• Hughes, L.E. (2018). Streptomyces phage UNTPL, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH229864.1
• Hughes, L.E. (2018). Streptomyces phage Yosif, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH248947.1
• Hughes, L.E. (2018). Streptomyces phage Wentworth, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH019216.1
• Hughes, L.E. (2018). Streptomyces phage Yara, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MH019215.1
• Hughes, L.E. (2018). Streptomyces phage Rima, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX670790.2
• Hughes, L.E. (2017). Streptomyces phage AbbeyMikolon, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG593800.1
• Hughes, L.E. (2017). Streptomyces phage Attoomi, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG593801.1
• Hughes, L.E. (2017). Streptomyces phage HaugeAnator, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG663582.1
• Hughes, L.E. (2017). Streptomyces phage Omar, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG593802.1
• Hughes, L.E. (2017). Streptomyces phage Percastrophe, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG663583.1
• Hughes, L.E. (2017). Streptomyces phage Romero, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG663584.1
• Hughes, L.E. (2017). Streptomyces phage Rowa, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG593803.1
• Hughes, L.E. (2017). Streptomyces phage ToriToki, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG663585.1
• Hughes, L.E. (2017). Streptomyces phage ZooBear, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG663586.1
• Hughes, L.E. (2017). Streptomyces phage Alsaber, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG298964.1
• Hughes, L.E. (2017). Streptomyces phage Immanuel3, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG518520.1
• Hughes, L.E. (2017). Streptomyces phage Manuel, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MG518519.1
• Hughes, L.E. (2017). Streptomyces phage NootNoot, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF347636.1
• Hughes, L.E. (2017). Streptomyces phage Paradiddles, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF347637.1
• Hughes, L.E. (2017). Streptomyces phage Peebs, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF347638.1
• Hughes, L.E. (2017). Streptomyces phage Samisti12, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF347639.1
• Hughes, L.E. (2017). Streptomyces phage Amethyst, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF766044.1
• Hughes, L.E. (2017). Streptomyces phage BeardedLady, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541403.1
• Hughes, L.E. (2017). Streptomyces phage BryanRecycles, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541404.1
• Hughes, L.E. (2017). Streptomyces phage Celeste, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541405.1
• Hughes, L.E. (2017). Streptomyces phage Dattran, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541406.1
• Hughes, L.E. (2017). Streptomyces phage Daudau, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF766045.1
• Hughes, L.E. (2017). Streptomyces phage Diane, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF766046.1
• Hughes, L.E. (2017). Streptomyces phage Esperer, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541407.1
• Hughes, L.E. (2017). Streptomyces phage Jash, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541408.1
• Hughes, L.E. (2017). Streptomyces phage Oliynyk, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541409.1
• Hughes, L.E. (2017). Streptomyces phage Ozzie, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF541410.1
• Hughes, L.E. (2017). Streptomyces phage SqueakyClean, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF766047.1
• Hughes, L.E. (2017). Streptomyces phage Tefunt, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF766048.1
• Hughes, L.E. (2017). Arthrobacter phage Wheelbite, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF140434.1
• Hughes, L.E. (2017). Streptomyces phage DrGrey, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF467948.1
• Hughes, L.E. (2017). Streptomyces phage Spectropatronm, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/MF467949.1
• Hughes, L.E. (2017). Streptomyces phage BabyGotBac, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY365739.1
• Hughes, L.E. (2017). Mycobacterium phage Bubbles123, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY348865.1
• Hughes, L.E. (2016). Arthrobacter phage Greenhouse, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX688103.1
• Hughes, L.E. (2016). Arthrobacter phage Oxynfrius, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX688102.1
• Hughes, L.E. (2016). Streptomyces phage Bioscum, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY092483.1
• Hughes, L.E. (2016). Streptomyces phage Ididsumtinwong, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY092479.1
• Hughes, L.E. (2016). Streptomyces phage Mojorita, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY092482.1
• Hughes, L.E. (2016). Streptomyces phage OlympicHelado, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX670789.1
• Hughes, L.E. (2016). Streptomyces phage PapayaSalad, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY092481.1
• Hughes, L.E. (2016). Streptomyces phage Picard, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY092480.1
• Hughes, L.E. (2016). Streptomyces phage Raleigh, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KY092484.1
• Hughes, L.E. (2016). Streptomyces phage Brataylor, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX507345.1
• Hughes, L.E. (2016). Streptomyces phage Godpower, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX507344.1
• Hughes, L.E. (2016). Streptomyces phage Lorelei, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KX507343.1
• Hughes, L.E. (2016). Mycobacterium phage Loadrie, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KU997639.1
• Hughes, L.E. (2016). Streptomyces phage Chymera, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KU958700.1
• Hughes, L.E. (2016). Streptomyces phage Xkcd426, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KU530220.1
• Hughes, L.E. (2016). Streptomyces phage Maih, complete genome. http://www.ncbi.nlm.nih.gov/nuccore/KU189325.1

Textbook

• Hughes, R., Hughes, L.E. (2018). Microorganisms: A Laboratory Manual. Third Edition. Dubuque, IA, Kendall Hunt Publishing Company.
• Poxleitner, M., Hughes, L.E., Pope, W., Jacobs-Sera, D., Sivanathan, V., Hatfull, G. (2017). Phage Discovery Guide, Streptomyces spp.. Chevy Chase, MD, Howard Hughes Medical Institute.

Contracts, Grants and Sponsored Research

Grant - Research

• Padilla, P.A. (Principal), Burggren, W.W. (Co-Principal), Hughes, L.E. (Co-Principal), Cisneros, G. (Co-Principal), "G-RISE at UNT," sponsored by National Institutes of Health - NIGMS, Federal, $2187228 Funded. (2021 - 2026).
• Hughes, L.E., "Fostering Outstanding Cohorts in Undergraduate Science II," sponsored by National Science Foundation, Federal, $625235 Funded. (2013 - 2019).
• Hughes, L.E. (Principal), Burleson, M. (Co-Principal), "BIOFUELS II: Biology Forum on Undergraduate Education in Life Sciences," University of North Texas, $2250 Funded. (2016 - 2017).
• Eddy, C.M. (Principal), Harrell, P.E. (Co-Principal), Quintanilla, J.A. (Co-Principal), Hughes, L.E. (Co-Principal), Pratt, S. (Co-Principal), "UNT Science and Mathematics Robert Noyce Scholarships," sponsored by National Science Foundation, Federal, $749965 Funded. (2010 - 2016).
• Hughes, L.E. (Principal), Burleson, M. (Co-Principal), Thompson, R. (Co-Principal), "BIOFUELS: Biology Forum on Undergraduate Education in Life Sciences," University of North Texas, $4425 Funded. (2015 - 2016).
• Hughes, L.E., "Undergraduate Science Education 2010," sponsored by Howard Hughes Medical Institute, Private, $1300000 Funded. (2010 - 2015).
• Hughes, L.E. (Principal), ""Fostering Outstanding Cohorts in Undergraduate Science FOCUS) Scholarships"," sponsored by National Science Foundation Scholarships in Science, Technology, Engineering and Mathematics Grant, Federal, $600000 Funded. (2008 - 2013).
• Cisneros, G.A. (Co-Principal), Hughes, L.E. (Co-Principal), Padilla, P.A. (Principal), Burggren, W.W. (Co-Principal), "G-RISE at the University of North Texas," sponsored by National Institutes of Health, FED, Funded. (2021 - 2022).
• Dzialowski, E.M. (Co-Principal), Chapman, K.D. (Co-Principal), Hughes, L.E. (Principal), Burleson, M. (Co-Principal), Allen, M.S. (Co-Principal), Thompson, R. (Co-Principal), "Undergraduate Science Education 2010 - Core Proposal," sponsored by Howard Hughes Medical Institute, NFP, Funded. (2010 - 2015).
• Hughes, L. (Principal), ""Fostering Outstanding Cohorts in Undergraduate Science FOCUS) Scholarships"," sponsored by National Science Foundation Scholarships in Science, Technology, Engineering and Mathematics Grant, Federal, Funded. (2008 - 2013).
• Mason, D.S. (Co-Principal), Littler, K.H. (Co-Principal), Weller, K.E. (Co-Principal), Hughes, L.E. (Co-Principal), Harrell, P.E. (Principal), "Science and Mathematics Robert Noyce Scholarships," sponsored by National Science Foundation, FED, Funded. (2005 - 2010).

Grant - Service

• Eddy, C.M. (Principal), Quintanilla, J.A. (Co-Principal), Hughes, L.E. (Co-Principal), Harrell, P.E. (Co-Principal), "UNT Science and Mathematics Robert Noyce Scholarship," sponsored by National Science Foundation, FED, Funded. (2010 - 2023).

Grant - Teaching

• Antunes, M. (Principal), Henard, C.A. (Co-Principal), Alberts, A. (Supporting), Hughes, L.E. (Co-Principal), "HHMI SEA-GENES Project," sponsored by Howard Hughes Medical Institute (HHMI), Private, $11000 Funded. (2019).
• Chapman, K.D. (Co-Principal), Hughes, L.E. (Principal), "Undergraduate Science Education 2010- Core Proposal, Lee Hughes (PD), Mike Allen, Bob Benjamin, Mark Burleson, Ed Dzialowski, Rudi Thompson (co-PIs); (Chapman course development in 2013)," sponsored by Howard Hughes Medical Institute (HHMI), Private, $1300000 Funded. (2010 - 2014).
• Antunes, M. (Principal), Henard, C. (Co-Principal), Alberts, A. (Supporting), Hughes, L. (Co-Principal), "HHMI SEA-GENES Project," sponsored by Howard Hughes Medical Institute (HHMI), Private, Funded. (2019).
• Hughes, L.E. (Principal), Padilla, P.A. (Co-Principal), "Fostering Outstanding Cohorts in Undergraduate Science II," sponsored by National Science Foundation, FED, Funded. (2013 - 2019).
• Chapman, K.D. (Co-Principal), Hughes, L. (Principal), "Undergraduate Science Education 2010- Core Proposal, Lee Hughes (PD), Mike Allen, Bob Benjamin, Mark Burleson, Ed Dzialowski, Rudi Thompson (co-PIs); (Chapman course development in 2013)," sponsored by Howard Hughes Medical Institute (HHMI), Private, Funded. (2010 - 2014).