Kassaw, T. K., Xu, W., Zalewski, C. W., Kiwimagi, K., Weiss, R., Antunes, M. S., Prasad, A., Medford, J. I. (2022). Developing a genetic toggle switch in Arabidopsis. Bulletin of the American Physical Society. 67(3), F04.003.
Kiwimagi, K., Antunes, M. S., Xu, W., Kassaw, T. K., Zalewski, C., Medford, J. I., Prasad, A. (2020). Synthetic genetic circuits using plant protoplasts. Bulletin of the American Physical Society. 65(1), U26.002.
Schaumberg, K., Antunes, M. S., Kassaw, T. K., Xu, W., Zalewski, C., Medford, J. I., Prasad, A. (2016). Quantitative characterization of genetic parts and circuits using protoplasts for plant synthetic biology. Molecular Biology of the Cell. 27(25), M270.
Schaefer, T. T., Medford, J. I., Antunes, M. S., Morey, K. J. (2015). Optimization of a conditionally stable transcription factor for the detection of progesterone in Arabidopsis thaliana using protoplast luciferase imaging. Molecular Biology of the Cell. 26(25), P1920.
Shaw, A. K., Medford, J. I., Antunes, M. S., McCormick, W. S., Wicker, D. (2007). Hyperspectral Exploitation with Plant Sentinels. SPIE: The International Society for Optics and Photonics. 6554(65540S), 12.
Schaumberg, K., Xu, W., Zalewski, C., Kassaw, T., Antunes, M. S., Medford, J., Prasad, A. (2015). Methods for quantitative analysis in plant synthetic biology. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 249, BIOT 333.
Ferreira, S. S., Antunes, M. S. (2024). Genetically encoded Boolean logic operators to sense and integrate phenylpropanoid metabolite levels in plants. New Phytologist. https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.19823
Hanauer, D. I., Zhang, T., Graham, M. J., Adams, S. D., Ahumada-Santos, Y. P., Alvey, R. M., Antunes, M. S., Ayuk, M. A., Elena Báez-Flores, M., Bancroft, C. T., Bates, T. C., Bechman, M. J., Behr, E., Beyer, A. R., Bortz, R. L., Bowder, D. M., Briggs, L. A., Brown-Kennerly, V., Buckholt, M. A., Bullock, S. K., Butela, K. A., Byrum, C. A., Caruso, S. M., Chia, C. P., Chong, R. A., Chung, H., Clase, K. L., Coleman, S. T., Parks Collins, D., Conant, S. B., Condon, B. M., Connerly, P. L., Connors, B. J., Cook-Easterwood, J. E., Crump, K. E., D’Elia, T., Dennis, M. K., DeVeaux, L. C., Diacovich, L., Duffy, I., Edgington, N. P., Edwards, D. C., Egwuatu, T. O., Eivazova, E. R., Fallest-Strobl, P. C., Fillman, C. L., Findley, A. M., Fisher, E., Fisher, M. R., Fogarty, M. P., Freise, A. C., Frost, V. J., Gainey, M. D., Garcia Costas, A. M., Garza, A. A., Gavin, H. E., Ghittoni, R., Gibb, B., Golebiewska, U. P., Grinath, A. S., Gurney, S. M., Hare, R. F., Heninger, S. G., Hinz, J. M., Hughes, L. E., Jayachandran, P., Johnson, K. C., Johnson, A. A., Kanther, M., Kenna, M., Kirkpatrick, B. L., Klyczek, K. K., Kohl, K. P., Kuchka, M., LaPeruta, A. J., Lee-Soety, J. Y., Lewis, L. O., Lindberg, H. M., Madden, J. A., Markov, S. A., Mastropaolo, M. D., Mathur, V., McClory, S. P., Merkhofer, E. C., Merkle, J. A., Michael, S. F., Mitchell, J. C., Molloy, S. D., Monti, D. L., Mussi, M. A., Nance, H., Nieto-Fernandez, F. E., Nissen, J. C., Nsa, I. Y., O’Donnell, M. G., Page, S. T., Panagakis, A., Parra-Unda, J. R., Pelletier, T. A., Perez Morales, T. G., Peters, N. T., Phuntumart, V., Pollenz, R. S., Preuss, M. L., Puthoff, D. P., Raifu, M. K., Reyna, N. S., Rinehart, C. A., Rocheleau, J. M., Rossier, O., Rudner, A. D., Rueschhoff, E. E., Ryan, A., Saha, S., Shaffer, C. D., Smith, M. A., Sprenkle, A. B., Strong, C. L., Sunnen, C. N., Tarbox, B. P., Temple, L., Thoemke, K. R., Thomas, M. A., Tobiason, D. M., Tolsma, S. S., Garcia, J. T., Valentine, M. S., Vazquez, E., Ward, R. E., Ward, C. M., Ware, V. C., Warner, M. H., Washington, J. M., Westholm, D. E., Wheaton, K. A., Wilkes, B. M., Williams, E. C., Biederman, W. H., Cresawn, S. G., Heller, D. M., Jacobs-Sera, D., Hatfull, G. F., Asai, D. J., Sivanathan, V. (2023). Models of classroom assessment for course-based research experiences. Other. 8, . https://www.frontiersin.org/articles/10.3389/feduc.2023.1279921
Anderson, C. E., Ferreira, S. S., Antunes, M. S. (2023). Integration of multiple stress signals in plants using synthetic Boolean logic gates. Plant Physiology. 192(4), 3189–3202. https://academic.oup.com/plphys/article/192/4/3189/7146947
Ferreira, S. S., Anderson, C. E., Antunes, M. S. (2023). A Logical Way to Reprogram Plants. Biochemical and Biophysical Research Communications. 654, 80-86. https://www.sciencedirect.com/science/article/pii/S0006291X23002668
Amack, S. C., Ferreira, S. S., Antunes, M. (2023). Tuning the Transcriptional Activity of the CaMV 35S Promoter in Plants by Single-Nucleotide Changes in the TATA Box. Other. 12(1), 178-185. American Chemical Society (ACS). https://pubs.acs.org/doi/full/10.1021/acssynbio.2c00457
Ferreira, S., Antunes, M. (2021). Re-engineering plant phenylpropanoid metabolism with the aid of synthetic biosensors. Frontiers in Plant Science. 12, 701385. https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2021.701385/full
Amack, S. C., Antunes, M. S. (2020). CaMV35S promoter--a plant biology and biotechnology workhorse in the era of synthetic biology. Other. 24, 100179. Elsevier. https://www.sciencedirect.com/science/article/pii/S2214662820300608
Vasconcelos, M. V., Antunes, M. S., Oliveira, M. F., Lopes, M. A., Figueiredo, J. F. (2018). Callus induction and plant regeneration from immature embryos culture of tropical maize. Other. 17(3), 359-368. https://www.alice.cnptia.embrapa.br/alice/handle/doc/1103395
Kassaw, T. K., Donayre-Torres, A. J., Antunes, M. S., Morey, K. J., Medford, J. I. (2018). Engineering synthetic regulatory circuits in plants. Plant Science. 273, 13-22. https://www.sciencedirect.com/science/article/pii/S0168945218300529
Bick, M. J., Greisen, P. J., Morey, K. J., Antunes, M. S., La, D., Sankaran, B., Reymond, L., Johnsson, K., Medford, J. I., Baker, D. (2017). Computational design of environmental sensors for the potent opioid fentanyl. eLife. 6, 23.
Antunes, M. S., Hodges, T. K., Carpita, N. C. (2016). A benzoate-activated promoter from Aspergillus niger and regulation of its activity. Applied Microbiology and Biotechnology. 100(12), 5479-5489.
Yang, H., Wei, H., Ma, G., Antunes, M. S., Vogt, S., Cox, J., Zhang, X., Liu, X., Bu, L., Gleber, S. C., Carpita, N. C., Makowski, L., Himmel, M. E., Tucker, M. P., McCann, M. C., Murphy, A. S., Peer, W. A. (2016). Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice. Plant Biotechnology Journal. 14(10), 1998-2009.
Schaumberg, K. A., Antunes, M. S., Kassaw, T. K., Xu, W., Zalewski, C. S., Medford, J. I., Prasad, A. (2016). Quantitative characterization of genetic parts and circuits for plant synthetic biology. Other. 13(1), 94-100.
Feng, J., Jester, B. W., Tinberg, C. E., Mandell, D. J., Antunes, M. S., Chari, R., Morey, K. J., Rios, X., Medford, J. I., Church, G. M., Fields, S., Baker, D. (2015). A general strategy to construct small molecule biosensors in eukaryotes. eLife. 4, .
Antunes, M. S., Smith, J. J., Jantz, D., Medford, J. I. (2012). Targeted DNA excision in Arabidopsis by a re-engineered homing endonuclease. Other. 12, 12.
Antunes, M. S., Morey, K. J., Smith, J. J., Albrecht, K. D., Bowen, T. A., Zdunek, J. K., Troupe, J. F., Cuneo, M. J., Webb, C. T., Hellinga, H. W., Medford, J. I. (2011). Programmable Ligand Detection System in Plants through a Synthetic Signal Transduction Pathway. PLOS One. 6(1), 11.
Antunes, M. S., Morey, K. J., Tewari-Singh, N., Bowen, T. A., Smith, J. J., Webb, C. T., Hellinga, H. W., Medford, J. I. (2009). Engineering key components in a synthetic eukaryotic signal transduction pathway. Other. 5(270), 11.
Antunes, M. S., Ha, S., Tewari-Singh, N., Morey, K. J., Trofka, A. M., Kugrens, P., Deyholos, M., Medford, J. I. (2006). A synthetic de-greening gene circuit provides a reporting system that is remotely detectable and has a re-set capacity. Plant Biotechnology Journal. 4(6), 605-622.
Morey, K. J., Antunes, M. S., Barrow, M. J., Solorzano, F. A., Havens, K. L., Smith, J. J., Medford, J. (2012). Crosstalk between endogenous and synthetic components - synthetic signaling meets endogenous components. Biotechnology Journal. 7(7), 846-855.
Morey, K. J., Antunes, M. S., Albrecht, K. D., Bowen, T. A., Troupe, J. F., Havens, K. L., Medford, J. I. (2011). Developing a synthetic signal transduction system in plants. Other. Methods in Enzymology. 497, 581-602.