Vladimir Shulaev

Previous Scheduled Teaching

Published Intellectual Contributions

Book

• Shulaev, V. (2022). Plant Metabolic Engineering. 2396 244. New York, NY, Humana.

Editorial

• Mittler, R., Shulaev, V. (2013). Functional genomics, challenges and perspectives for the future.. Physiologia Plantarum. 148 (3) 317-21.

Editorial, Book Series

• Shulaev, V. (2022). Preface. Methods in Molecular Biology. 2396 v. https://api.elsevier.com/content/abstract/scopus_id/85119702252

Journal Article

• Neugent, M.L., Hulyalkar, N.V., Kumar, A., Xing, C., Zimmern, P.E., Shulaev, V., De Nisco, N.J. (2023). Urinary Glycosaminoglycans Are Associated with Recurrent UTI and Urobiome Ecology in Postmenopausal Women.. Other. 9 (4) 1022-1032.
• Neugent, M.L., Hulyalkar, N.V., Kumar, A., Xing, C., Zimmern, P.E., Shulaev, V., De Nisco, N.J. (2023). Urinary Glycosaminoglycans are Associated with Recurrent UTI and Urobiome Ecology in Postmenopausal Women.. Other.
• Neugent, M.L., Kumar, A., Hulyalkar, N.V., Lutz, K.C., Nguyen, V.H., Fuentes, J.L., Zhang, C., Nguyen, A., Sharon, B.M., Kuprasertkul, A., Arute, A.P., Ebrahimzadeh, T., Natesan, N., Xing, C., Shulaev, V., Li , Q., Zimmern, P.E., Palmer, K.L., De Nisco, N.J. (2022). Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome.. Other. 3 (10) 100753.
• Ghaste, M., Mattivi, F., Astarita, G., Shulaev, V. (2022). Analysis of Grape Volatiles Using Atmospheric Pressure Ionization Gas Chromatography Mass Spectrometry-Based Metabolomics.. Methods in molecular biology (Clifton, N.J.). 2396 117-136.
• Meitei, N.S., Shulaev, V. (2022). Bioinformatics in Lipidomics: Automating Large-Scale LC-MS-Based Untargeted Lipidomics Profiling with SimLipid Software.. Methods in molecular biology (Clifton, N.J.). 2396 197-214.
• Salazar, C., Jones, M.D., Isaac, G., Shulaev, V. (2022). Comprehensive Analysis of Plant Lipids Using Sub-2-μm Particle CO₂-Based Chromatography Coupled to Mass Spectrometry.. Methods in molecular biology (Clifton, N.J.). 2396 187-195.
• Choudhury, F.K., Pandey, P., Meitei, R., Cardona, D., Gujar, A.C., Shulaev, V. (2022). GC-MS/MS Profiling of Plant Metabolites.. Methods in molecular biology (Clifton, N.J.). 2396 101-115.
• Zaman, K., Pandey, P., Shulaev, V., Prokai, L. (2022). Global Comparative Label-Free Yeast Proteome Analysis by LC-MS/MS After High-pH Reversed-Phase Peptide Fractionation Using Solid-Phase Extraction Cartridges.. Methods in molecular biology (Clifton, N.J.). 2396 71-84.
• Isaac, G., Shulaev, V., Plumb, R.S. (2022). Non-targeted Lipidomics Using a Robust and Reproducible Lipid Separation Using UPLC with Charged Surface Hybrid Technology and High-Resolution Mass Spectrometry.. Methods in molecular biology (Clifton, N.J.). 2396 175-186.
• Neugent, M.L., Kumar, A., Hulyalkar, N.V., Lutz, K.C., Nguyen, V.H., Fuentes, J.L., Zhang, C., Nguyen, A., Sharon, B.M., Kuprasertkul, A., Arute, A.P., Li, Q., Xing, C., Shulaev, V., Zimmern, P.E., Palmer, K.L., De Nisco, N.J. (2021). Recurrent urinary tract infection and estrogen shape the taxonomic ecology and functional potential of the postmenopausal urobiome. Other. Cold Spring Harbor Laboratory. https://www.biorxiv.org/content/early/2021/11/08/2021.11.06.467345
• Trimpin, S., Moreno-Pedraza, A., Yenchick, F.S., Hoang, K., Pophristic, M., Karki, S., Marshall, D.D., Lee, C., Lu, I., El-Baba, T.J., Lutomski, C.A., Wang, B., Pagnotti, V.S., Meher, A.K., Chakrabarty, S., Imperial, L.F., Madarshahian, S., Leach, S.M., Gibson, S.C., Elia, E.A., Lietz, C.B., Richards, A.L., Thawoos, S.M., Davis, E.T., Jarois, D.R., Woodall, D.W., Liao, G., Muthunayake, N.S., Redding, M.J., Reynolds, C.A., Anthony, T.M., Vithanarachchi, S.M., DeMent, P., Adewale, A.O., Yan, L., Wager-Miller, J., Ahn, Y., Sanderson, T.H., Przyklenk, K., Greenberg, M.L., Suits, A.G., Allen, M.J., Narayan, S.B., Caruso, J.A., Stemmer, P.M., Nguyen, H.M., Weidner, S.M., Rackers, K.J., Djuric, A., Shulaev, V., Hendrickson, T.L., Chow, C.S., Pflum, M.K., Grayson, S.M., Lobodin, V.V., Ni, C., Guo, Z., Mackie, K., Walker, J.M., McEwen, C.N., Inutan, E.D. (2020). New Ionization Processes for Ionizing Nonvolatile Compounds in Mass Spectrometry: The Road of Discovery to Current State-of-the-Art. Journal of the American Society for Mass Spectrometry. https://par.nsf.gov/biblio/10202813
• Pandey, P., Zaman, K., Prokai, L., Shulaev, V. (2020). Comparative Proteomics Analysis Reveals Unique Early Signaling Response of Saccharomyces cerevisiae to Oxidants with Different Mechanism of Action.. International Journal of Molecular Sciences. 22 (1)
• Azad, R.K., Shulaev, V. (2019). Metabolomics technology and bioinformatics for precision medicine.. Briefings in Bioinformatics. 20 (6) 1957-1971.
• Hsieh, M.H., Choe, J.H., Gadhvi, J., Kim, Y.J., Arguez, M.A., Palmer, M., Gerold, H., Nowak, C., Do, H., Mazambani, S., Knighton, J.K., Cha, M., Goodwin, J., Kang, M.K., Jeong, J.Y., Lee, S.Y., Faubert, B., Xuan, Z., Abel, E.D., Scafoglio, C., Shackelford, D.B., Minna, J.D., Singh, P.K., Shulaev, V., Bleris, L., Hoyt, K., Kim, J., Inoue, M., DeBerardinis, R.J., Kim, T.H., Kim, J.W. (2019). p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas.. Other. 28 (7) 1860-1878.e9.
• Salazar, C., Armenta, J.M., Cortés, D.F., Shulaev, V. (2019). Combination of an AccQ•Tag-Ultra-Performance Liquid Chromatographic Method with Tandem Mass Spectrometry for the Analysis of Amino Acids.. Methods in molecular biology (Clifton, N.J.). 2030 191-206.
• Choudhury, F.K., Devireddy, A.R., Azad, R.K., Shulaev, V., Mittler, R. (2018). Local and Systemic Metabolic Responses during Light-Induced Rapid Systemic Signaling.. Plant Physiology. 178 (4) 1461-1472.
• Shulaev, V., Isaac, G. (2018). Supercritical fluid chromatography coupled to mass spectrometry - A metabolomics perspective.. Other. 1092 499-505.
• Choudhury, F.K., Devireddy, A.R., Azad, R.K., Shulaev, V., Mittler, R. (2018). Rapid accumulation of glutathione during light stress in Arabidopsis.. Other. 59 (9) 1817–1826.
• Goodwin, J., Choi, H., Hsieh, M.H., Neugent, M.L., Ahn, J.M., Hayenga, H.N., Singh, P.K., Shackelford, D.B., Lee, I.K., Shulaev, V., Dhar, S., Takeda, N., Kim, J.W. (2018). Targeting Hypoxia-Inducible Factor-1α/Pyruvate Dehydrogenase Kinase 1 Axis by Dichloroacetate Suppresses Bleomycin-induced Pulmonary Fibrosis.. Other. 58 (2) 216-231.
• Azad, R.K., Shulaev, V. (2018). Metabolomics technology and bioinformatics for precision medicine.. Other. 20 (6) 1957–1971.
• Nesterov, V.V., Zakharov, L.N., Nesterov, V.N., Calderon, J.G., Longo, A., Zaman, K., Choudhury, F.K., Farrell, W., Shulaev, V., Richmond, M.G. (2017). 5, 7-Dihydroxy-2-(4-hydroxyphenyl) chroman-4-one (naringenin): X-ray diffraction structures of the naringenin enantiomers and DFT evaluation of the preferred ground-state structures and thermodynamics for racemization. Journal of Molecular Structure. 1130 994–1000. Elsevier.
• Shulaev, V., Chapman, K.D. (2017). Plant lipidomics at the crossroads: From technology to biology driven science. Other. 1862 (8) 786-791.
• Pisciotta, J.M., Scholl, P.F., Shuman, J.L., Shulaev, V., Sullivan, D.J. (2017). Quantitative characterization of hemozoin in Plasmodium berghei and vivax.. 7 110-119. Elsevier.
• Goodwin, J.E., Choi, H., Hsieh, M.H., Neugent, M.L., Ahn, J.M., Hayenga, H.N., Singh, P.K., Shackelford, D.B., Lee, I.K., Shulaev, V., Dhar, S., Takeda, N., Kim, J.W. (2017). Targeting HIF-1α/PDK1 Axis by Dichloroacetate (DCA) Suppresses Bleomycin-induced Pulmonary Fibrosis.. Other.
• Salazar, C., Jones, M.D., Sturtevant, D., Horn, P.J., Crossley, J., Zaman, K., Chapman, K.D., Wrona, M., Isaac, G., Smith, N., Shulaev, V. (2017). Development and application of sub-2-μm particle CO2 -based chromatography coupled to mass spectrometry for comprehensive analysis of lipids in cottonseed extracts. Rapid communications in mass spectrometry : RCM. 31 (7) 591-605.
• Tripathi, P., Rabara, R.C., Reese, R.N., Miller, M.A., Rohila, J.S., Subramanian, S., Shen, Q.J., Morandi, D., Buecking, H., Shulaev, V., Rushton, P.J. (2016). A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes. BMC Genomics. 17
• Ghaste, M., Mistrik, R., Shulaev, V. (2016). Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics. International Journal of Molecular Sciences. 17 (6)
• Khadilkar, A.S., Yadav, U.P., Salazar, C., Shulaev, V., Paez-Valencia, J., Pizzio, G.A., Gaxiola, R.A., Ayre, B.G. (2016). Constitutive and Companion Cell-Specific Overexpression of AVP1, Encoding a Proton-Pumping Pyrophosphatase, Enhances Biomass Accumulation, Phloem Loading, and Long-Distance Transport. Plant Physiology. 170 (1) 401-414. http://www.plantphysiol.org/content/170/1/401.abstract
• Liu, C., Wang, X., Shulaev, V., Dixon, R. (2016). A role for leucoanthocyanidin reductase in the extension of proanthocyanidins.. Nature Plants. 2 16182.
• Rahlouni, F., Szarka, S., Shulaev, V., Prokai, L. (2015). A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos. Other. 12 (6) 398-407.
• Lu, N., Zhao, B., Pereira, A., Shulaev, V., Veilleux, R.E. (2015). Anther culture induces transposable element movement in potato. Other. 120 (1) 361-366.
• Ghaste, M., Narduzzi, L., Carlin, S., Vrhovsek, U., Shulaev, V., Mattivi, F. (2015). Chemical composition of volatile aroma metabolites and their glycosylated precursors that can uniquely differentiate individual grape cultivars. Food Chemistry. 188 309-319.
• Nesterov, V.V., Zakharov, L.N., Nesterov, V.N., Shulaev, V. (2015). Crystal structure of (3E, 5E)-3,5-bis[4-(diethylazaniumyl)benzylidene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material. Other. 71 1513-+.
• Tripathi, P., Rabara, R.C., Shulaev, V., Shen, Q.J., Rushton, P.J. (2015). Understanding Water-Stress Responses in Soybean Using Hydroponics System A Systems Biology Perspective. Frontiers in Plant Science. 6
• Suzuki, N., Devireddy, A.R., Inupakutika, M.A., Baxter, A., Miller, G., Song, L., Shulaev, E., Azad, R.K., Shulaev, V., Mittler, R. (2015). Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants.. The Plant journal : for cell and molecular biology. 84 (4) 760-72.
• Garcia, A.M., Ladage, M.L., Dumesnil, D.R., Zaman, K., Shulaev, V., Azad, R.K., Padilla, P.A. (2015). Glucose induces sensitivity to oxygen deprivation and modulates insulin/IGF-1 signaling and lipid biosynthesis in Caenorhabditis elegans.. Genetics. 200 (1) 167-84.
• Blount, J.W., Redan, B.W., Ferruzzi, M.G., Reuhs, B.L., Cooper, B.R., Harwood, J.S., Shulaev, V., Pasinetti, G., Dixon, R. (2015). Synthesis and quantitative analysis of plasma-targeted metabolites of catechin and epicatechin.. Journal of Agricultural and Food Chemistry. 63 (8) 2233-40.
• Lu, N., Carter, J.D., Medina, T.B., Holt, S.H., Manrique-Carpintero, N.C., Upham, K.T., Pereira, A., Shulaev, V., Veilleux, R.E. (2014). Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato. Plant Cell Reports. 33 (7) 1203-1216.
• Suzuki, N., Rivero, R.M., Shulaev, V., Blumwald, E., Mittler, R. (2014). Abiotic and biotic stress combinations.. The New Phytologist. 203 (1) 32-43.
• Pantazis, C.J., Fisk, S., Mills, K., Flinn, B.S., Shulaev, V., Veilleux, R.E., Dan, Y. (2013). Development of an efficient transformation method by Agrobacterium tumefaciens and high throughput spray assay to identify transgenic plants for woodland strawberry (Fragaria vesca) using NPTII selection. Plant Cell Reports. 32 (3) 329-337.
• Sha, W., Martins, A.M., Laubenbacher, R., Mendes, P., Shulaev, V. (2013). The Genome-Wide Early Temporal Response of Saccharomyces cerevisiae to Oxidative Stress Induced by Cumene Hydroperoxide. PLOS One. 8 (9)
• Horn, P.J., Silva, J.E., Anderson, D.R., Fuchs, J.L., Borisjuk, L., Nazarenus, T.J., Shulaev, V., Cahoon, E.B., Chapman, K.D. (2013). Imaging heterogeneity of membrane and storage lipids in transgenic Camelina sativa seeds with altered fatty acid profiles.. The Plant journal : for cell and molecular biology. 76 (1) 138-50.
• Sohn, Y.S., Tamir, S., Song, L., Michaeli, D., Matouk, I., Conlan, A.R., Harir, Y., Holt, S.H., Shulaev, V., Paddock, M.L., Hochberg, A., Cabanchick, I.Z., Onuchic, J.N., Jennings, P.A., Nechushtai, R., Mittler, R. (2013). NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth.. Proceedings of the National Academy of Sciences of the United States of America. 110 (36) 14676-81.
• Suzuki, N., Miller, G., Salazar, C., Mondal, H.A., Shulaev, E., Cortes, D.F., Shuman, J.L., Luo, X., Shah, J., Schlauch, K., Shulaev, V., Mittler, R. (2013). Temporal-spatial interaction between reactive oxygen species and abscisic acid regulates rapid systemic acclimation in plants.. The Plant Cell. 25 (9) 3553-69.
• Bagchi, R., Salehin, M., Adeyemo, O.S., Salazar, C., Shulaev, V., Sherrier, D.J., Dickstein, R. (2012). Functional assessment of the Medicago truncatula NIP/LATD protein demonstrates that it is a high-affinity nitrate transporter.. Plant Physiology. 160 (2) 906-16.
• Veilleux, R.E., Mills, K.P., Baxter, A.J., Upham, K.T., Ferguson, T.J., Holt, S.H., Lu, N., Ruiz-Rojas, J.J., Pantazis, C.J., Davis, C.M., Lindsay, R.C., Powell, F.L., Dan, Y., Dickerman, A.W., Oosumi, T., Shulaev, V. (2012). Transposon tagging in diploid strawberry.. Plant Biotechnology Journal. 10 (8) 985-94.
• Salazar, C., Armenta, J.M., Shulaev, V. (2012). An UPLC-ESI-MS/MS Assay Using 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate Derivatization for Targeted Amino Acid Analysis: Application to Screening of Arabidopsis thaliana Mutants.. Other. 2 (3) 398-428.
• Jung, S., Cestaro, A., Troggio, M., Main, D., Zheng, P., Cho, I., Folta, K.M., Sosinski, B., Abbott, A., Celton, J.M., Arús, P., Shulaev, V., Verde, I., Morgante, M., Rokhsar, D., Velasco, R., Sargent, D.J. (2012). Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies.. BMC Genomics. 13 129.
• Quanbeck, S.M., Brachova, L., Campbell, A.A., Guan, X., Perera, A., He, K., Rhee, S.Y., Bais, P., Dickerson, J.A., Dixon, P., Wohlgemuth, G., Fiehn, O., Barkan, L., Lange, I., Lange, B.M., Lee, I., Cortes, D., Salazar, C., Shuman, J., Shulaev, V., Huhman, D.V., Sumner, L.W., Roth, M.R., Welti, R., Ilarslan, H., Wurtele, E.S., Nikolau, B.J. (2012). Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function".. Frontiers in Plant Science. 3 15.
• Horn, P.J., Korte, A.R., Neogi, P.B., Love, E., Fuchs, J.L., Strupat, K., Borisjuk, L., Shulaev, V., Lee, Y., Chapman, K.D. (2012). Spatial mapping of lipids at cellular resolution in embryos of cotton.. The Plant Cell. 24 (2) 622-36.
• Salazar, C., Armenta, J.M., Cortés, D.F., Shulaev, V. (2012). Combination of an AccQ·Tag-ultra performance liquid chromatographic method with tandem mass spectrometry for the analysis of amino acids.. Methods in molecular biology (Clifton, N.J.). 828 13-28.
• Suzuki, N., Miller, G., Morales, J., Shulaev, V., Torres, M.A., Mittler, R. (2011). Respiratory burst oxidases: the engines of ROS signaling.. Current Opinion in Plant Biology. 14 (6) 691-9.
• Katz, E., Boo, K.H., Kim, H.Y., Eigenheer, R.A., Phinney, B.S., Shulaev, V., Negre-Zakharov, F., Sadka, A., Blumwald, E. (2011). Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development.. Journal of Experimental Botany. 62 (15) 5367-84.
• Blekherman, G., Laubenbacher, R., Cortes, D.F., Mendes, P., Torti, F.M., Akman, S., Torti, S.V., Shulaev, V. (2011). Bioinformatics tools for cancer metabolomics.. Other. 7 (3) 329-343.
• Nesterov, V.V., Sarkisov, S.S., Shulaev, V., Nesterov, V.N. (2011). 1-Benzyl-3,5-bis-(4-chloro-benzyl-idene)piperidin-4-one.. Other. 67 (Pt 6) o1505-6.
• Cortes, D.F., Sha, W., Hower, V., Blekherman, G., Laubenbacher, R., Akman, S., Torti, S.V., Shulaev, V. (2011). Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress.. Other. 50 (11) 1565-74.
• Mittler, R., Vanderauwera, S., Suzuki, N., Miller, G., Tognetti, V.B., Vandepoele, K., Gollery, M., Shulaev, V., Van Breusegem, F. (2011). ROS signaling: the new wave?. Trends in Plant Science. 16 (6) 300-9.
• Cheema, A.K., Timofeeva, O., Varghese, R., Dimtchev, A., Shiekh, K., Shulaev, V., Suy, S., Collins, S., Ressom, H., Jung, M., Dritschilo, A. (2011). Integrated analysis of ATM mediated gene and protein expression impacting cellular metabolism.. Journal of Proteome Research. 10 (5) 2651-7.
• Nesterov, V.V., Sarkisov, S.S., Shulaev, V., Nesterov, V.N. (2011). 3,5-Bis(4-chloro-benzyl-idene)-1-methyl-piperidin-4-one.. Other. 67 (Pt 4) o760-1.
• Shulaev, V., Sargent, D.J., Crowhurst, R.N., Mockler, T.C., Folkerts, O., Delcher, A.L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S.P., Burns, P., Davis, T., Slovin, J.P., Bassil, N., Hellens, R.P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O.R., Jensen, R.V., Allan, A.C., Michael, T.P., Setubal, J.C., Celton, J.M., Rees, D.J., Williams, K.P., Holt, S.H., Ruiz Rojas, J.J., Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S.A., Troggio, M., Viola, R., Ashman, T.L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H.D., Bryant, Jr, D.W., Fox, S.E., Givan, S.A., Wilhelm, L.J., Naithani, S., Christoffels, A., Salama, D.Y., Carter, J.R., Lopez Girona, E., Zdepski, A., Wang, W., Kerstetter, R.A., Schwab, W., Korban, S.S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J.L., Salzberg, S.L., Dickerman, A.W., Velasco, R., Borodovsky, M., Veilleux, R.E., Folta, K.M. (2011). The genome of woodland strawberry (Fragaria vesca).. Nature Genetics. 43 (2) 109-16.
• Vanderauwera, S., Suzuki, N., Miller, G., van de Cotte, B., Morsa, S., Ravanat, J.L., Hegie, A., Triantaphylidès, C., Shulaev, V., Van Montagu, M.C., Van Breusegem, F., Mittler, R. (2011). Extranuclear protection of chromosomal DNA from oxidative stress.. Proceedings of the National Academy of Sciences of the United States of America. 108 (4) 1711-6.
• Bajad, S., Shulaev, V. (2011). LC-MS-based metabolomics.. Methods in molecular biology (Clifton, N.J.). 708 213-28.
• Shuman, J.L., Cortes, D.F., Armenta, J.M., Pokrzywa, R.M., Mendes, P., Shulaev, V. (2011). Plant metabolomics by GC-MS and differential analysis.. Methods in molecular biology (Clifton, N.J.). 678 229-46.
• Oosumi, T., Ruiz-Rojas, J.J., Veilleux, R.E., Dickerman, A., Shulaev, V. (2010). Implementing reverse genetics in Rosaceae: analysis of T-DNA flanking sequences of insertional mutant lines in the diploid strawberry, Fragaria vesca.. Physiologia Plantarum. 140 (1) 1-9.
• Rojo, L.E., Villano, C.M., Joseph, G., Schmidt, B., Shulaev, V., Shuman, J.L., Lila, M.A., Raskin, I. (2010). Wound-healing properties of nut oil from Pouteria lucuma.. Other. 9 (3) 185-95.
• Ruiz-Rojas, J.J., Sargent, D.J., Shulaev, V., Dickerman, A.W., Pattison, J., Holt, S.H., Ciordia, A., Veilleux, R.E. (2010). SNP discovery and genetic mapping of T-DNA insertional mutants in Fragaria vesca L.. Other. 121 (3) 449-63.
• Bais, P., Moon, S.M., He, K., Leitao, R., Dreher, K., Walk, T., Sucaet, Y., Barkan, L., Wohlgemuth, G., Roth, M.R., Wurtele, E.S., Dixon, P., Fiehn, O., Lange, B.M., Shulaev, V., Sumner, L.W., Welti, R., Nikolau, B.J., Rhee, S.Y., Dickerson, J.A. (2010). PlantMetabolomics.org: a web portal for plant metabolomics experiments.. Plant Physiology. 152 (4) 1807-16.
• Armenta, J.M., Cortes, D.F., Pisciotta, J.M., Shuman, J.L., Blakeslee, K., Rasoloson, D., Ogunbiyi, O., Sullivan, Jr, D.J., Shulaev, V. (2010). Sensitive and rapid method for amino acid quantitation in malaria biological samples using AccQ.Tag ultra performance liquid chromatography-electrospray ionization-MS/MS with multiple reaction monitoring.. Analytical Chemistry. 82 (2) 548-58.
• Laubenbacher, R., Hower, V., Jarrah, A., Torti, S.V., Shulaev, V., Mendes, P., Torti, F.M., Akman, S. (2009). A systems biology view of cancer.. Biochimica et Biophysica Acta. 1796 (2) 129-39.
• Tripathi, A.K., Sha, W., Shulaev, V., Stins, M.F., Sullivan, Jr, D.J. (2009). Plasmodium falciparum-infected erythrocytes induce NF-kappaB regulated inflammatory pathways in human cerebral endothelium.. Other. 114 (19) 4243-52.
• Miller, G., Schlauch, K., Tam, R., Cortes, D., Torres, M.A., Shulaev, V., Dangl, J.L., Mittler, R. (2009). The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli.. Other. 2 (84) ra45.
• Rivero, R.M., Shulaev, V., Blumwald, E. (2009). Cytokinin-dependent photorespiration and the protection of photosynthesis during water deficit.. Plant Physiology. 150 (3) 1530-40.
• Hower, V., Mendes, P., Torti, F.M., Laubenbacher, R., Akman, S., Shulaev, V., Torti, S.V. (2009). A general map of iron metabolism and tissue-specific subnetworks.. Other. 5 (5) 422-43.
• Koussevitzky, S., Suzuki, N., Huntington, S., Armijo, L., Sha, W., Cortes, D., Shulaev, V., Mittler, R. (2008). Ascorbate peroxidase 1 plays a key role in the response of Arabidopsis thaliana to stress combination.. Journal of Biological Chemistry. 283 (49) 34197-203.
• Ng, C.G., Coppens, I., Govindarajan, D., Pisciotta, J., Shulaev, V., Griffin, D.E. (2008). Effect of host cell lipid metabolism on alphavirus replication, virion morphogenesis, and infectivity.. Proceedings of the National Academy of Sciences of the United States of America. 105 (42) 16326-31.
• Shulaev, V., Korban, S.S., Sosinski, B., Abbott, A.G., Aldwinckle, H.S., Folta, K.M., Iezzoni, A., Main, D., Arús, P., Dandekar, A.M., Lewers, K., Brown, S.K., Davis, T., Gardiner, S.E., Potter, D., Veilleux, R.E. (2008). Multiple models for Rosaceae genomics.. Plant Physiology. 147 (3) 985-1003.
• Miller, G., Shulaev, V., Mittler, R. (2008). Reactive oxygen signaling and abiotic stress.. Physiologia Plantarum. 133 (3) 481-9.
• Suzuki, N., Bajad, S., Shuman, J., Shulaev, V., Mittler, R. (2008). The transcriptional co-activator MBF1c is a key regulator of thermotolerance in Arabidopsis thaliana.. Journal of Biological Chemistry. 283 (14) 9269-75.
• Shulaev, V., Cortes, D., Miller, G., Mittler, R. (2008). Metabolomics for plant stress response.. Physiologia Plantarum. 132 (2) 199-208.
• Bajad, S., Shulaev, V. (2007). Highly-parallel metabolomics approaches using LC-MS for pharmaceutical and environmental analysis.. Other. 26 (6) 625-636.
• Martins, A.M., Sha, W., Evans, C., Martino-Catt, S., Mendes, P., Shulaev, V. (2007). Comparison of sampling techniques for parallel analysis of transcript and metabolite levels in Saccharomyces cerevisiae.. Other. 24 (3) 181-8.
• Pisciotta, J.M., Coppens, I., Tripathi, A.K., Scholl, P.F., Shuman, J., Bajad, S., Shulaev, V., Sullivan, Jr, D.J. (2007). The role of neutral lipid nanospheres in Plasmodium falciparum haem crystallization.. Other. 402 (1) 197-204.
• Varbanova, M., Yamaguchi, S., Yang, Y., McKelvey, K., Hanada, A., Borochov, R., Yu, F., Jikumaru, Y., Ross, J., Cortes, D., Ma, C.J., Noel, J.P., Mander, L., Shulaev, V., Kamiya, Y., Rodermel, S., Weiss, D., Pichersky, E. (2007). Methylation of gibberellins by Arabidopsis GAMT1 and GAMT2.. The Plant Cell. 19 (1) 32-45.
• Shimada, T., Nakano, R., Shulaev, V., Sadka, A., Blumwald, E. (2006). Vacuolar citrate/H+ symporter of citrus juice cells.. Planta. 224 (2) 472-80.
• Shulaev, V., Oliver, D.J. (2006). Metabolic and proteomic markers for oxidative stress. New tools for reactive oxygen species research.. Plant Physiology. 141 (2) 367-72.
• Shulaev, V. (2006). Metabolomics technology and bioinformatics.. Other. 7 (2) 128-39.
• Gadjev, I., Vanderauwera, S., Gechev, T.S., Laloi, C., Minkov, I.N., Shulaev, V., Apel, K., Inzé, D., Mittler, R., Van Breusegem, F. (2006). Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis.. Plant Physiology. 141 (2) 436-45.
• Oosumi, T., Gruszewski, H.A., Blischak, L.A., Baxter, A.J., Wadl, P.A., Shuman, J.L., Veilleux, R.E., Shulaev, V. (2006). High-efficiency transformation of the diploid strawberry (Fragaria vesca) for functional genomics.. Planta. 223 (6) 1219-30.
• Suzuki, N., Rizhsky, L., Liang, H., Shuman, J., Shulaev, V., Mittler, R. (2005). Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c.. Plant Physiology. 139 (3) 1313-22.
• Davletova, S., Rizhsky, L., Liang, H., Shengqiang, Z., Oliver, D.J., Coutu, J., Shulaev, V., Schlauch, K., Mittler, R. (2005). Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis.. The Plant Cell. 17 (1) 268-81.
• Rizhsky, L., Liang, H., Shuman, J., Shulaev, V., Davletova, S., Mittler, R. (2004). When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress.. Plant Physiology. 134 (4) 1683-96.
• Rizhsky, L., Shulaev, V., Mittler, R. (2004). Measuring programmed cell death in plants.. Methods in molecular biology (Clifton, N.J.). 282 179-89.
• Mittler, R., Lam, E., Shulaev, V., Cohen, M. (1999). Signals controlling the expression of cytosolic ascorbate peroxidase during pathogen-induced programmed cell death in tobacco.. Plant Molecular Biology. 39 (5) 1025-35.
• Ribnicky, D.M., Shulaev, V., Raskin, I. (1998). Intermediates of salicylic acid biosynthesis in tobacco. Plant Physiology. 118 (2) 565-72.
• Abad, M.S., Hakimi, S.M., Kaniewski, W.K., Rommens, C.M., Shulaev, V., Lam, E., Shah, D.M. (1997). Characterization of acquired resistance in lesion-mimic transgenic potato expressing bacterio-opsin.. Other. 10 (5) 635-45.
• Smirnov, S., Shulaev, V., Tumer, N.E. (1997). Expression of Pokeweed Antiviral Protein in Transgenic Plants Induces Virus Resistance in Grafted Wild-Type Plants Independently of Salicylic Acid Accumulation and Pathogenesis-Related Protein Synthesis.. Plant Physiology. 114 (3) 1113-1121.
• Mittler, R., Shulaev, V., Seskar, M., Lam, E. (1996). Inhibition of Programmed Cell Death in Tobacco Plants during a Pathogen-Induced Hypersensitive Response at Low Oxygen Pressure.. The Plant Cell. 8 (11) 1991-2001.
• León, J., Shulaev, V., Yalpani, N., Lawton, M.A., Raskin, I. (1995). Benzoic acid 2-hydroxylase, a soluble oxygenase from tobacco, catalyzes salicylic acid biosynthesis.. Proceedings of the National Academy of Sciences of the United States of America. 92 (22) 10413-7.
• Shulaev, V., Leon, J., Raskin, I. (1995). Is Salicylic Acid a Translocated Signal of Systemic Acquired Resistance in Tobacco?. The Plant Cell. 7 (10) 1691-1701.
• Mittler, R., Shulaev, V., Lam, E. (1995). Coordinated Activation of Programmed Cell Death and Defense Mechanisms in Transgenic Tobacco Plants Expressing a Bacterial Proton Pump.. The Plant Cell. 7 (1) 29-42.

Published Erratum

• Pantazis, C.J., Fisk, S., Mills, K., Flinn, B.S., Shulaev, V., Veilleux, R.E., Dan, Y. (2022). Correction to: Development of an efficient transformation method by Agrobacterium tumefaciens and high throughput spray assay to identify transgenic plants for woodland strawberry (Fragaria vesca) using NPTII selection.. Plant Cell Reports. 41 (4) 1169.

Contracts, Grants and Sponsored Research

Grant - Research

• Shulaev, V. (Co-Principal), "Defining the dynamics of urobiome structure and function in postmenopausal women and its role in recurrent UTI susceptibility," sponsored by NIH, Federal, $1344116 Funded. (2021 - 2026).
• De Nisco, N. (Principal), Shulaev, V. (Other), "Glycosaminoglycan Utilization and Metabolism by the Microbiota of the Urogenital Tract," sponsored by Robert A Welch Foundation, National, $240000 Funded. (2020 - 2023).
• Shulaev, V. (Co-Principal), Venables, B.J. (Co-Principal), Kennedy, J.H. (Co-Principal), Scott, A. (Co-Principal), "A Preliminary Non-Targeted Contaminant Survey of the Upper Trinity River and Associated Constructed Wetlands," sponsored by AERI, University of North Texas, $10000 Funded. (2020 - 2020).
• Shulaev, V. (Principal), Venables, B. (Co-Principal), "Studying wastewater exposome using alligator gar exposed to wastewater.," sponsored by AERI, University of North Texas, $10000 Funded. (2019 - 2019).
• Azad, R.K. (Co-Principal), Mittler, R. (Principal), Shulaev, V. (Co-Principal), "Ultrafast omics reveals key players in the response of plants to abiotic stress," sponsored by National Science Foundation, Federal, $720000 Funded. (2014 - 2019).
• Shulaev, V., "Metabolomic Investigation of Cotton Fiber Quality Biomarkers," sponsored by Cotton Incorporated, Private, $72150 Funded. (2016 - 2016).
• Gaxiola, R. (Principal), Ayre, B.G. (Principal), Shulaev, V. (Co-Principal), "Collaborative Research: Integrating two different roles of the proton-pumping pyrophosphatase in the regulation and efficiency ofcarbon utilization and transport in planta," sponsored by National Science Foundation, Directorate for Biological Sciences, Integrative Organismal Systems, Federal, $760000 Funded. (2012 - 2016).
• Roepe, P. (Principal), Shulaev, V. (Co-Principal), Sullivan, D.J. (Co-Principal), "Collaborative Activities to Promote Metabolomics Research," sponsored by National Institutes of Heath (NIAID), Federal, $150000 Funded. (2015 - 2016).
• Shulaev, V., "Metabolomic Investigation of Cotton Fiber Quality Biomarkers," sponsored by Cotton Incorporated, Private, $64000 Funded. (2015 - 2015).
• Shulaev, V., "Metabolomic Investigation of Cotton Fiber Quality Biomarkers," sponsored by Cotton Incorporated, Private, $30000 Funded. (2014 - 2014).
• De Nisco, N. (Principal), Shulaev, V. (Other), "Glycosaminoglycan Utilization and Metabolism by the Microbiota of the Urogenital Tract," sponsored by Robert A Welch Foundation, National, Funded. (2020 - 2023).
• Azad, R.K. (Principal), Mittler, R. (Principal), Shulaev, V. (Co-Principal), "Ultrafast Omics Reveals Key Players in the Response of Plants to Abiotic Stress," sponsored by National Science Foundation, FED, Funded. (2014 - 2018).
• Shulaev, V. (Principal), "Optimized Combination Antimalarial Drug Therapy," sponsored by Georgetown University, NFP, Funded. (2015 - 2017).
• Shulaev, V. (Principal), "Metabolomic Investigation of Cotton Fiber Quality Biomarkers," sponsored by Cotton Incorporated, NFP, Funded. (2016 - 2016).
• Ayre, B.G. (Principal), Shulaev, V. (Co-Principal), "Collaborative Research: Integrating Two Different Roles of the Proton-Pumping Pyrophosphatase in the Regulation and Efficiency of Carbon Utilization and Transport in Planta," sponsored by National Science Foundation, FED, Funded. (2012 - 2016).
• Shulaev, V. (Principal), "Metabolomic Investigation of Cotton Fiber Quality Biomarkers," sponsored by Cotton Incorporated, NFP, Funded. (2015 - 2015).
• Shulaev, V., "Metabolomic Investigation of Cotton Fiber Quality Biomarkers," sponsored by Cotton Incorporated, Private, Funded. (2014 - 2014).