Klaver, I. J., Hoeinghaus, D. J., Grossman, J. W., Frith, A. J., Atkinson, S. F., Kennedy, J. H. (2023). The Trinity River in Texas – Muddy and Emblematic. River Culture– Life as a Dance to the Rhythm of the Waters.. Pp. 447–467.. Paris: UNESCO Publishing.
Hoeinghaus, D. J. (2018). Dams and River Fragmentation. Encyclopedia of the Anthropocene. 3, 241-248. Elsevier.
Hoeinghaus, D. J. (2010). Lethal and non-lethal effects of predators on stream fish species and assemblages: a synthesis of predation experiments.
Albuquerque, C. Q., Condini, M. V., Tanner, S. E., Reis-Santos, P., Saint'Pierre, E. D., Seyboth, E., Possamai, B., Hoeinghaus, D. J., Garcia, A. M. (2023). Coastal upwelling influences population structure of dusky grouper Epinephelus marginatus: an integrative approach based on otolith chemistry and muscle stable isotopes. Marine Environmental Research. 189, 106077.
Condini, M. V., Malinowski, C. R., Hoeinghaus, D. J., Harried, B. L., Roberts, A. P., Soulen, B. K., Roark, K. J., Khursigara, A. J., Fischer, L. G., Possamai, B., Hostim-Silva, M., Garcia, A. M. (2023). Spatial analysis of mercury and stable isotopes in the vulnerable Dusky Grouper Epinephelus marginatus along the Brazilian coast.. Marine Pollution Bulletin. 187, 114526.
Cantanhêde, L., Teresa, F., Hoeinghaus, D. J., Winemiller, K., Montag, L. (2022). Dark diversity in Amazonian stream fish communities: What factors determine species absence along environmental gradients?. Freshwater Biology. 10.1111/fwb.14004.
Leal, L., Hoeinghaus, D. J., Compson, Z. G., Agostinho, A. A., Fernandes, R., Pelicice, F. M. (2021). Changes in the ecosystem functions generated by fish populations after the introduction of a non-native predator (Cichla kelberi). Neotropical Ichthyology. 19, e210041.
Possamai, B., Hoeinghaus, D. J., Garcia, A. M. (2021). Environmental factors drive interannual variation in shallow water estuarine food-chain length. Estuarine, Coastal and Shelf Science. 252, 107241.
Possamai, B., Hoeinghaus, D. J., Garcia, A. M. (2021). Shifting baselines: integrating ecological and isotopic time-lags improves trophic position estimates in aquatic consumers. Marine Ecology Progress Series. 666, 19-30.
Brejão, G. L., Hoeinghaus, D. J., Roa-Fuentes, C. A., Pérez-Mayorga, M. A., Ferraz, S., Casatti, L. (2021). Taxonomic and functional turnover of Amazonian stream fish assemblages is determined by deforestation history and environmental variables at multiple scales. Neotropical Ichthyology. 19, e210042.
Perkin, J. S., Papraniku, I. F., Gibbs, W. K., Hoeinghaus, D. J., Walker, D. M. (2021). Temporal trajectories in metacommunity structure: Insights from interdisciplinary research in intermittent streams. 2021, e1531. WIREs Water.
Vollrath, S. R., Possamai, B., Schneck, F., Hoeinghaus, D. J., Albertoni, E. F., Garcia, A. M. (2021). Trophic niches and diet shifts of two congeneric mullet species in marine and estuarine habitats. 101, 431-441. Journal of the Marine Biological Association of the United Kingdom.
Lima-Junior, D. P., Bellay, S., Hoeinghaus, D. J., Bini, L. M., Lima, L. B., Yotoko, K., Agostinho, A. A. (2021). Host diversity, phylogenetic relationships and local environmental factors drive infection patterns of a non-native parasite in tropical floodplain fish assemblages. Hydrobiologia: The Journal of Aquatic Sciences. 848, 1041-1057.
Possamai, B., Hoeinghaus, D. J., Odebrecht, C., Abreu, P. C., Moraes, L. E., Santos, A. C., Garcia, A. M. (2020). Freshwater inflow variability affects the relative importance of allochthonous sources for estuarine fishes. 43: 880-893.
Harried, B. L., Daugherty, D. J., Hoeinghaus, D. J., Roberts, A. P., Venables, B. J., Sutton, T. M., Soulen, B. K. (2020). Population contributions of large females may be eroded by contaminant body burden and maternal transfer: a case study of Alligator Gar. 40, 566-579.
Zeni, J. O., Hoeinghaus, D. J., Roa-Fuentes, C. A., Casatti, L. (2020). Stochastic species loss and dispersal limitation drive patterns of spatial and temporal beta diversity of fish assemblages in tropical agroecosystem streams. Hydrobiologia: The Journal of Aquatic Sciences. 847, 3829-3843.
Arantes, C. C., Fitzgerald, D. B., Hoeinghaus, D. J., Winemiller, K. O. (2019). Impacts of hydroelectric dams on fishes and fisheries in tropical rivers through the lens of functional traits. 37, 28-40.
Montag, L., Winemiller, K., Keppeler, F., Leão, H., Benone, N., Torres, N., Prudente, B., Begot, T., Bower, L., Saenz, D., Lopez-Delgado, E., Morales, Y., Hoeinghaus, D. J., Juen, L. (2019). Land cover, riparian zones, and instream habitat influence stream fish assemblages in the eastern Amazon. Ecology of Freshwater Fish. 28, 317-329.
Alves, G., Tofoli, R., Message, H., Lima Junior, D., Hoeinghaus, D. J. (2018). New decree promotes fish invasion in the Amazon and Pantanal. Hydrobiologia: The Journal of Aquatic Sciences. 27, 2449–2450.
Dodds, W., Higgs, S., Spangler, M., Guinnip, J., Scott, J., Hedden, S., Frenette, B., Taylor, R., Schechner, A., Hoeinghaus, D. J., Evans-White, M. (2018). Spatial heterogeneity and controls of ecosystem metabolism in a Great Plains river network. Hydrobiologia: The Journal of Aquatic Sciences. 813, 85-102.
Alves dos Santos, D., Hoeinghaus, D. J., Gomes, L. (2018). Spatial scales and the invasion paradox: a test using fish assemblages in a Neotropical floodplain. Hydrobiologia: The Journal of Aquatic Sciences. 817, 121-131.
Brejao, G. L., Hoeinghaus, D. J., Pérez-Mayorga, M. A., Ferraz, S. F., Casatti, L. (2018). Threshold responses of Amazonian stream fishes to timing and extent of deforestation. Conservation Biology. 32, 860-871.
Alves, G., Hoeinghaus, D. J., Manetta, G., Benedito, E. (2017). Dry season limnological conditions and basin geology exhibit complex relationships with $δ$13C and $δ$15N of basal carbon sources in four Neotropical floodplains. PLOS One. 12, e0174499.
Zeni, J. O., Hoeinghaus, D. J., Casatti, L. (2017). Effects of pasture conversion to sugarcane for biofuels production on stream fish assemblages in tropical agroecosystems. Freshwater Biology. 62, 2026-2038.
Churchill, C. J., Hoeinghaus, D. J., La Point, T. W. (2017). Environmental conditions increase growth rates and mortality of zebra mussels (Dreissena polymorpha) along the southern invasion front in North America. Biological Invasions. (19), 2355-2373.
Tofoli, R. M., Dias, R. M., Alves, G. H., Hoeinghaus, D. J., Gomes, L. C., Baumgartner, M. T., Agostinho, A. A. (2017). Gold at what cost? Another megaproject threatens biodiversity in the Amazon. Other. 15, 129-131.
Garcia, A., Winemiller, K., Hoeinghaus, D. J., Claudino, M., Bastos, R., Correa, F., Huckembeck, S., Vieira, J., Loebmann, D., Abreu, P., others, (2017). Hydrologic pulsing promotes connectivity and food web subsidies in a subtropical coastal ecosystem. Marine Ecology Progress Series. 567, 17–28.
Ribolli, J., Hoeinghaus, D. J., Johnson, J., Zaniboni-Filho, E., de Freitas, P. D., Galetti, P. M. (2017). Isolation-by-time population structure in potamodromous Dourado Salminus brasiliensis in southern Brazil. Conservation Genetics. 18, 67–76.
Condini, M. V., Hoeinghaus, D. J., Roberts, A. P., Soulen, B. K., Garcia, A. M. (2017). Mercury concentrations in dusky grouper Epinephelus marginatus in littoral and neritic habitats along the Southern Brazilian coast. Marine Pollution Bulletin. 115(1), 266–272. Pergamon.
Vitule, J. R., Agostinho, A. A., Azevedo-Santos, V. M., Daga, V. S., Darwall, W. R., Fitzgerald, D. B., Frehse, F. A., Hoeinghaus, D. J., Lima-Junior, D. P., Magalhaes, A. L., others, (2017). We need better understanding about functional diversity and vulnerability of tropical freshwater fishes. Biodiversity and Conservation. 26, 757–762.
Winemiller, K. O., McIntyre, P. B., Castello, L., Fluet-Chouinard, E., Giarrizzo, T., Nam, S., Baird, I. G., Darwall, W., Lujan, N. K., Harrison, I., Stiassny, M. L., Silvano, R. A., Fitzgerald, D. B., Pelicice, F. M., Agostinho, A. A., Gomes, L. C., Albert, J. S., Petrere Jr., M., Zarfl, C., Mulligan, M., Sullivan, J. P., Arantes, C., Sousa, L. M., Koning, A. A., Hoeinghaus, D. J., Sabaj, M., Lundberg, J. G., Armbruster, J., Petry, P., Zuanon, J., Torrente Vilara, G., Snoeks, J., Ou, C., Pavanelli, C. S., Akama, A., van Soesbergen, A., Saenz, L. (2016). Balancing hydropower and biodiversity in the Amazon, Congo and Mekong – basin-scale planning is needed to minimize impacts in mega-diverse rivers. Science. 351, 128–129.
Driver, L. J., Hoeinghaus, D. J. (2016). Fish metacommunity responses to experimental drought are determined by habitat heterogeneity and connectivity. Freshwater Biology. 61, 533–548.
Driver, L. J., Hoeinghaus, D. J. (2016). Spatiotemporal dynamics of intermittent stream fish metacommunities in response to prolonged drought and reconnectivity. Marine and Freshwater Research. 67(11), 1667–1679. CSIRO PUBLISHING.
Lima Junior, D. P., Hoeinghaus, D. J., Bini, L. M., Agostinho, A. A. (2015). Are non-native species larger in invaded ranges? A test with tropical floodplain fish assemblages following inundation of a biogeographic barrier. Biological Invasions. 17, 3263-3274.
Pendleton, R. M., Hoeinghaus, D. J., Gomes, L. C., Agostinho, A. A. (2015). Trophic downgrading results in complex ecosystem dynamics in experimental tropical floodplain food webs. Hydrobiologia: The Journal of Aquatic Sciences. 760, 15-28.
Condini, M. V., Hoeinghaus, D. J., Garcia, A. M. (2015). Trophic ecology of dusky grouper Epinephelus marginatus (Actinopterygii, Epinephelidae) in littoral and neritic habitats of southern Brazil as elucidated by stomach contents and stable isotope analyses. Hydrobiologia: The Journal of Aquatic Sciences. 743, 109-125.
Pendleton, R. M., Hoeinghaus, D. J., Gomes, L. C., Agostinho, A. A. (2014). Loss of rare fish species from tropical floodplain food webs affects community structure and ecosystem multifunctionality in a mesocosm experiment. PLOS One. 9, e84568.
Fry, M. J., Hoeinghaus, D. J., Ponette, A. G., Thompson, R., La Point, T. W. (2012). Fracking vs. faucets: balancing energy needs and water sustainability at urban frontiers. Environmental Science & Technology. 46, 7444-7445.
Hoeinghaus, D. J., Vieira, J. P., Costa, C. S., Bemvenuti, C. E., Winemiller, K. O., Garcia, A. M. (2011). Hydrogeomorphic characteristics affect carbon sources supporting estuarine consumers within and among ecological guilds. Hydrobiologia: The Journal of Aquatic Sciences. 673, 79-92.
Winemiller, K. O., Hoeinghaus, D. J., Pease, A. A., Esselman, P., Honeycutt, R. L., Gbanaador, D., Carrera, E., Payne, J. (2011). Stable isotope analysis reveals food web structure and watershed impacts along the fluvial gradient of a Mesoamerican coastal river. River Research and Applications. 27, 791-803.
Hoeinghaus, D. J. (2010). Aquatic food webs in mangrove and seagrass habitats of Centla Wetland, a Biosphere Reserve in southeastern Mexico.
Hoeinghaus, D. J. (2010). Patch dynamics and spatial heterogeneity in streams.
Hoeinghaus, D. J. (2009). Effects of river impoundment on ecosystem services of large tropical rivers: embodied energy and market value of artisanal fisheries..
Hoeinghaus, D. J. (2008). Can stable isotope ratios provide for community-wide measures of trophic structure?: Comment..
Hoeinghaus, D. J. (2008). Hydrogeomorphology and river impoundment affect food-chain length in diverse Neotropical food webs..
Hoeinghaus, D. J. (2007). Isotopic variation of fishes in freshwater and estuarine zones of a large subtropical coastal lagoon..
Hoeinghaus, D. J. (2007). Landscape-scale hydrologic characteristics differentiate patterns of carbon flow in large-river food webs..
Hoeinghaus, D. J. (2007). Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups..
Hoeinghaus, D. J. (2007). Nekton assemblage structure in created and natural marsh-edge habitats of the Guadalupe Estuary, Texas..
Hoeinghaus, D. J. (2007). Size-based trophic shifts of saltmarsh dwelling blue crabs elucidated by dual stable C and N isotope analyses..
Hoeinghaus, D. J. (2006). 2006.
Effects of seasonality and migratory prey on body condition of Cichla species in a tropical floodplain river..
Hoeinghaus, D. J. (2006). Preliminary examination of food web structure of Nicola Lake (Taim Hydrological System, south Brazil) using dual C and N stable isotope analyses..
Hoeinghaus, D. J. (2004). Compositional change in fish assemblages along the Andean piedmont – Llanos floodplain gradient of the Portuguesa River, Venezuela..
Hoeinghaus, D. J. (2003). Movement of Cichla species (Cichlidae) in a Venezuelan floodplain river..
Hoeinghaus, D. J. (2003). Spatiotemporal variation in fish assemblage structure in tropical floodplain creeks..
